View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8628_high_4 (Length: 314)
Name: NF8628_high_4
Description: NF8628
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8628_high_4 |
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Alignment Details
Target: chr1 (Bit Score: 154; Significance: 1e-81; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 154; E-Value: 1e-81
Query Start/End: Original strand, 61 - 266
Target Start/End: Complemental strand, 3825213 - 3825002
Alignment:
| Q |
61 |
aaaaatagttataggttcatatttaaagcgtggttttatcttgcaatttgtcaacagtcacgttcatcatagcataatcaactatagtttctcctcacct |
160 |
Q |
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| T |
3825213 |
aaaaatagttataggttcatatttaaagcgtggttttatcttgcaatttgtcaacagtcacgttcatcatagcataatcaactatagtttctcctcacct |
3825114 |
T |
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| Q |
161 |
attatatcctatggtttcccctcat------nnnnnnnnntcctatggtcaatgacttatcttaatagaatcatagacaacacttattccatttttttac |
254 |
Q |
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||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| | |
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| T |
3825113 |
attatatcctatggtttcccctcataaaaaaaaaaaaaaatcctatggtcaatgacttatcttaatagaatcatagacaacacttattccttttttttcc |
3825014 |
T |
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| Q |
255 |
ttccttatttca |
266 |
Q |
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|||||||||||| |
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| T |
3825013 |
ttccttatttca |
3825002 |
T |
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