View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8628_low_1 (Length: 600)
Name: NF8628_low_1
Description: NF8628
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8628_low_1 |
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Alignment Details
Target: chr4 (Bit Score: 493; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 493; E-Value: 0
Query Start/End: Original strand, 19 - 585
Target Start/End: Original strand, 32523904 - 32524472
Alignment:
| Q |
19 |
gaaaccccgtcgacatgctgaaacttcaaccaattaccatttttaccggttacacggtaattagatgaagccaccaaagtgccatcaatggttatggaaa |
118 |
Q |
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| T |
32523904 |
gaaaccccgtcgacatgctgaaacttcaaccaattaccatttttaccggttacacggtaattagatgaagccaccaaagtgccatcaatggttatggaaa |
32524003 |
T |
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| Q |
119 |
tagctttattgatacattttccactaaatgttgcagttccaagtaagaatttcccttgtggcacgtaaattgatgccggatacggcgaggaacatgcctt |
218 |
Q |
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| T |
32524004 |
tagctttattgatacattttccactaaatgttgcagttccaagtaagaatttcccttgtggcacgtaaattgatgccggatacggcgaggaacatgcctt |
32524103 |
T |
|
| Q |
219 |
agcccatacatttccaaatgcctttgtggaatcagttttaccatctggtttggctccatagtttattacattatatgtcgtcgacgacgacgccgctttc |
318 |
Q |
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| T |
32524104 |
agcccatacatttccaaatgcctttgtggaatcagttttaccatctggtttggctccatagtttattacattgtatgtcgacgacgacgacgccgctttt |
32524203 |
T |
|
| Q |
319 |
gcggttgaggaatttaagtaacaagataatgtgattatgattaagac-aaaagaaagaagattgtttagttt-agacattttggtgaaatgttgtaatga |
416 |
Q |
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| T |
32524204 |
gcggttgaggaatttaagtaacaagataatgtgattatgattaagacaaaaaggaagaagattgtttagtttaacacattctggtgaaatattgtaatga |
32524303 |
T |
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| Q |
417 |
agaatttgggagagttgtataaataatgtgttagaggaaattaagaagttgaaagattatggagtggtagaagtggtgaagaaggtagtggggtgggagt |
516 |
Q |
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| T |
32524304 |
agaatttggaagagttgtataaataatgtgttagaggaaattaagaagttgaaagattatggagtggtagaagtggtgaagaaggtagtggggtgggagt |
32524403 |
T |
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| Q |
517 |
tgtaacggttgtgagggtatttatagcttaagaatttggannnnnnnnggctaattacgtattgcacag |
585 |
Q |
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| T |
32524404 |
tgtaacggttgtgagggtatttatagcttaagaatttggattttttttggctaattacgtattacacag |
32524472 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 91 - 188
Target Start/End: Complemental strand, 10881608 - 10881511
Alignment:
| Q |
91 |
accaaagtgccatcaatggttatggaaatagctttattgatacattttccactaaatgttgcagttccaagtaagaatttcccttgtggcacgtaaat |
188 |
Q |
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| T |
10881608 |
accaatgtgccatcaatgattatagagatatccttgttggtacattctcctctaaatgtgacccttccaagcaaaaatttcccatgtggcacgtaaat |
10881511 |
T |
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