View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8628_low_10 (Length: 271)

Name: NF8628_low_10
Description: NF8628
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8628_low_10
NF8628_low_10
[»] chr6 (11 HSPs)
chr6 (6-169)||(14589734-14589897)
chr6 (198-267)||(14623294-14623363)
chr6 (196-271)||(14589632-14589707)
chr6 (64-169)||(14623392-14623498)
chr6 (215-271)||(10405046-10405102)
chr6 (231-271)||(14589554-14589594)
chr6 (212-264)||(29938608-29938660)
chr6 (227-271)||(30629598-30629642)
chr6 (231-271)||(33123022-33123062)
chr6 (214-271)||(7632859-7632916)
chr6 (231-271)||(14623212-14623252)
[»] chr7 (9 HSPs)
chr7 (227-271)||(26982771-26982815)
chr7 (212-271)||(38646256-38646315)
chr7 (212-269)||(4132478-4132535)
chr7 (214-267)||(45578005-45578058)
chr7 (227-271)||(43250428-43250472)
chr7 (205-271)||(24155646-24155712)
chr7 (229-271)||(38646175-38646217)
chr7 (227-269)||(43250376-43250418)
chr7 (231-271)||(40037646-40037686)
[»] chr5 (8 HSPs)
chr5 (227-271)||(42364309-42364353)
chr5 (215-270)||(36864512-36864567)
chr5 (231-271)||(26221035-26221075)
chr5 (228-271)||(26221113-26221156)
chr5 (215-256)||(25713694-25713735)
chr5 (226-271)||(29486504-29486549)
chr5 (214-270)||(7604182-7604238)
chr5 (227-271)||(21032539-21032583)
[»] chr4 (20 HSPs)
chr4 (212-271)||(22720498-22720557)
chr4 (82-129)||(51369221-51369268)
chr4 (214-271)||(2198042-2198099)
chr4 (215-268)||(41622189-41622242)
chr4 (214-271)||(52673592-52673649)
chr4 (227-271)||(22720595-22720639)
chr4 (227-271)||(52673687-52673731)
chr4 (214-271)||(15794757-15794815)
chr4 (222-264)||(50485791-50485833)
chr4 (226-263)||(39396827-39396864)
chr4 (215-271)||(2198125-2198180)
chr4 (214-270)||(22020110-22020166)
chr4 (227-271)||(22768233-22768277)
chr4 (227-271)||(22923666-22923710)
chr4 (227-271)||(22928319-22928363)
chr4 (227-271)||(22984598-22984642)
chr4 (227-271)||(22998186-22998230)
chr4 (227-271)||(35884359-35884403)
chr4 (227-271)||(35884418-35884462)
chr4 (214-270)||(39897103-39897159)
[»] chr1 (6 HSPs)
chr1 (214-268)||(8352129-8352183)
chr1 (227-271)||(26468301-26468345)
chr1 (227-264)||(3384319-3384356)
chr1 (217-270)||(32796836-32796889)
chr1 (227-271)||(31635752-31635796)
chr1 (226-271)||(39969771-39969818)
[»] chr3 (4 HSPs)
chr3 (231-271)||(50334932-50334972)
chr3 (79-120)||(11532681-11532722)
chr3 (214-271)||(36344525-36344582)
chr3 (226-270)||(39836955-39836999)
[»] chr8 (3 HSPs)
chr8 (229-271)||(1214025-1214067)
chr8 (227-271)||(6197915-6197959)
chr8 (227-271)||(43140553-43140597)
[»] chr2 (5 HSPs)
chr2 (227-269)||(10495735-10495777)
chr2 (227-264)||(13953862-13953899)
chr2 (227-264)||(14095069-14095106)
chr2 (68-128)||(20493307-20493367)
chr2 (227-271)||(43100756-43100800)


Alignment Details
Target: chr6 (Bit Score: 144; Significance: 9e-76; HSPs: 11)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 144; E-Value: 9e-76
Query Start/End: Original strand, 6 - 169
Target Start/End: Complemental strand, 14589897 - 14589734
Alignment:
Q  6 actgaaatgaataatttagtatttatctcttggacttttaataacaatgggaaagagacatgtaacaagaatatatttgaactttgtcacatgaaattac 105  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  14589897 actgaaatgaataatttagtatttatctcttggacttttaataacaatgggaaagagacatgtaacaagaatatatttgaactttatcacatgaaattac 14589798  T
Q  106 aaaggcaaactcttgtcaatgaaccaatggcatcaacatcaaatgattattattgcgataagat 169  Q
    ||||||||||||||||||||||| || |||||||||||||| |||||||||||||| |||||||    
T  14589797 aaaggcaaactcttgtcaatgaatcactggcatcaacatcacatgattattattgcaataagat 14589734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 198 - 267
Target Start/End: Complemental strand, 14623363 - 14623294
Alignment:
Q  198 gttgaaaaggaaacatatactccctctcatcactattataaataaaacttcactttttagatacattgaa 267  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14623363 gttgaaagggaaacatatactccctctcatcactattataaataaaacttcactttttagatacattgaa 14623294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 196 - 271
Target Start/End: Complemental strand, 14589707 - 14589632
Alignment:
Q  196 cagttgaaaaggaaacatatactccctctcatcactattataaataaaacttcactttttagatacattgaataat 271  Q
    ||||||||| |||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  14589707 cagttgaaagggaaacctatactccctctcatcactattataaataaaactttactttttagatacattgaataat 14589632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 64 - 169
Target Start/End: Complemental strand, 14623498 - 14623392
Alignment:
Q  64 catgtaacaagaatatatttgaactttgtcacatgaaattacaaaggcaaactcttgtcaatgaaccaatggcatcaacatcaaat-gattattattgcg 162  Q
    ||||||| |||| | |||||||||||||||||||||||||||||||||||||| | |||||||||| | |||||||||||||| || ||||||||||||     
T  14623498 catgtaaaaagagtctatttgaactttgtcacatgaaattacaaaggcaaactttagtcaatgaactactggcatcaacatcacatggattattattgca 14623399  T
Q  163 ataagat 169  Q
    |||||||    
T  14623398 ataagat 14623392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 215 - 271
Target Start/End: Original strand, 10405046 - 10405102
Alignment:
Q  215 tactccctctcatcactattataaataaaacttcactttttagatacattgaataat 271  Q
    ||||| |||| |||||||||||||||||||||||| |||||| ||||||| ||||||    
T  10405046 tactctctctgatcactattataaataaaacttcattttttaaatacattaaataat 10405102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 231 - 271
Target Start/End: Original strand, 14589554 - 14589594
Alignment:
Q  231 tattataaataaaacttcactttttagatacattgaataat 271  Q
    ||||||||| |||||||||||||| ||||||||||||||||    
T  14589554 tattataaacaaaacttcacttttcagatacattgaataat 14589594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 212 - 264
Target Start/End: Original strand, 29938608 - 29938660
Alignment:
Q  212 atatactccctctcatcactattataaataaaacttcactttttagatacatt 264  Q
    ||||||||| |||  |||||||||||| ||||| |||||||||||||||||||    
T  29938608 atatactccatctgctcactattataagtaaaatttcactttttagatacatt 29938660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 227 - 271
Target Start/End: Original strand, 30629598 - 30629642
Alignment:
Q  227 tcactattataaataaaacttcactttttagatacattgaataat 271  Q
    ||||||||||||| |||| ||||||||||||||| ||||||||||    
T  30629598 tcactattataaacaaaatttcactttttagatagattgaataat 30629642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 231 - 271
Target Start/End: Original strand, 33123022 - 33123062
Alignment:
Q  231 tattataaataaaacttcactttttagatacattgaataat 271  Q
    ||||||||| |||||||||||||||| ||||||||||||||    
T  33123022 tattataaacaaaacttcactttttaaatacattgaataat 33123062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 214 - 271
Target Start/End: Complemental strand, 7632916 - 7632859
Alignment:
Q  214 atactccctctcatcactattataaataaaacttcactttttagatacattgaataat 271  Q
    ||||||||||   ||| ||||||||| ||||||| |||||||||||||| ||||||||    
T  7632916 atactccctccggtcattattataaacaaaacttaactttttagatacactgaataat 7632859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 231 - 271
Target Start/End: Original strand, 14623212 - 14623252
Alignment:
Q  231 tattataaataaaacttcactttttagatacattgaataat 271  Q
    ||||||||  |||||||||||||| ||||||||||||||||    
T  14623212 tattataagcaaaacttcacttttcagatacattgaataat 14623252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 37; Significance: 0.000000000006; HSPs: 9)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 227 - 271
Target Start/End: Original strand, 26982771 - 26982815
Alignment:
Q  227 tcactattataaataaaacttcactttttagatacattgaataat 271  Q
    ||||||||||||  |||||||||||||||||||||||||||||||    
T  26982771 tcactattataagcaaaacttcactttttagatacattgaataat 26982815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 212 - 271
Target Start/End: Complemental strand, 38646315 - 38646256
Alignment:
Q  212 atatactccctctcatcactattataaataaaacttcactttttagatacattgaataat 271  Q
    |||||||||||||  ||||||||||||  ||||||||||| |||||||| ||||||||||    
T  38646315 atatactccctctggtcactattataagcaaaacttcactatttagatatattgaataat 38646256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 212 - 269
Target Start/End: Complemental strand, 4132535 - 4132478
Alignment:
Q  212 atatactccctctcatcactattataaataaaacttcactttttagatacattgaata 269  Q
    ||||||| |||||  ||| ||||||||| ||||||| |||||||||||||||||||||    
T  4132535 atatacttcctctggtcattattataaacaaaacttaactttttagatacattgaata 4132478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 214 - 267
Target Start/End: Original strand, 45578005 - 45578058
Alignment:
Q  214 atactccctctcatcactattataaataaaacttcactttttagatacattgaa 267  Q
    |||||| ||||  |||||||||||| ||||| ||||||||||||||||||||||    
T  45578005 atactctctctagtcactattataagtaaaatttcactttttagatacattgaa 45578058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 227 - 271
Target Start/End: Complemental strand, 43250472 - 43250428
Alignment:
Q  227 tcactattataaataaaacttcactttttagatacattgaataat 271  Q
    ||||||||||||  ||||||| |||||||||||||||||||||||    
T  43250472 tcactattataagcaaaactttactttttagatacattgaataat 43250428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 205 - 271
Target Start/End: Complemental strand, 24155712 - 24155646
Alignment:
Q  205 aggaaacatatactccctctcatcactattataaataaaacttcactttttagatacattgaataat 271  Q
    ||||| || |||||||||   |||||||| ||||| ||||||||| |||||||||||||| ||||||    
T  24155712 aggaagcaaatactcccttctatcactatcataaacaaaacttcaatttttagatacattaaataat 24155646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 229 - 271
Target Start/End: Original strand, 38646175 - 38646217
Alignment:
Q  229 actattataaataaaacttcactttttagatacattgaataat 271  Q
    |||||||||| |||||||  |||||||||||||||||||||||    
T  38646175 actattataagtaaaactcaactttttagatacattgaataat 38646217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 227 - 269
Target Start/End: Original strand, 43250376 - 43250418
Alignment:
Q  227 tcactattataaataaaacttcactttttagatacattgaata 269  Q
    ||||||||||||  ||||||| |||||||||||||||||||||    
T  43250376 tcactattataagcaaaactttactttttagatacattgaata 43250418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 231 - 271
Target Start/End: Complemental strand, 40037686 - 40037646
Alignment:
Q  231 tattataaataaaacttcactttttagatacattgaataat 271  Q
    ||||||||||||||||| |||||||| || |||||||||||    
T  40037686 tattataaataaaactttactttttaaatgcattgaataat 40037646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 37; Significance: 0.000000000006; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 227 - 271
Target Start/End: Complemental strand, 42364353 - 42364309
Alignment:
Q  227 tcactattataaataaaacttcactttttagatacattgaataat 271  Q
    ||||||||||||  |||||||||||||||||||||||||||||||    
T  42364353 tcactattataagcaaaacttcactttttagatacattgaataat 42364309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 215 - 270
Target Start/End: Complemental strand, 36864567 - 36864512
Alignment:
Q  215 tactccctctcatcactattataaataaaacttcactttttagatacattgaataa 270  Q
    |||||||||  ||||||||||||||||||| |||||||||||||| |||| |||||    
T  36864567 tactccctccgatcactattataaataaaagttcactttttagattcattcaataa 36864512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 231 - 271
Target Start/End: Original strand, 26221035 - 26221075
Alignment:
Q  231 tattataaataaaacttcactttttagatacattgaataat 271  Q
    ||||||||| ||||||| |||||||||||||||||||||||    
T  26221035 tattataaacaaaactttactttttagatacattgaataat 26221075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 228 - 271
Target Start/End: Complemental strand, 26221156 - 26221113
Alignment:
Q  228 cactattataaataaaacttcactttttagatacattgaataat 271  Q
    ||||| ||||| ||||||||||||||||||||||| ||||||||    
T  26221156 cactaatataagtaaaacttcactttttagatacactgaataat 26221113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 215 - 256
Target Start/End: Original strand, 25713694 - 25713735
Alignment:
Q  215 tactccctctcatcactattataaataaaacttcacttttta 256  Q
    |||||||||| ||||||||||||||||||| |||| ||||||    
T  25713694 tactccctcttatcactattataaataaaagttcaattttta 25713735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 226 - 271
Target Start/End: Original strand, 29486504 - 29486549
Alignment:
Q  226 atcactattataaataaaacttcactttttagatacattgaataat 271  Q
    |||||||||||||  |||| ||||| ||||||||||||||||||||    
T  29486504 atcactattataagcaaaatttcacattttagatacattgaataat 29486549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 214 - 270
Target Start/End: Original strand, 7604182 - 7604238
Alignment:
Q  214 atactccctctcatcactattataaataaaacttcactttttagatacattgaataa 270  Q
    ||||||||||  |||||||||||||  |||| ||||||||||||||| | |||||||    
T  7604182 atactccctccgatcactattataagcaaaatttcactttttagatatactgaataa 7604238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 227 - 271
Target Start/End: Original strand, 21032539 - 21032583
Alignment:
Q  227 tcactattataaataaaacttcactttttagatacattgaataat 271  Q
    ||||||||||||  |||||| ||||||||| ||||||||||||||    
T  21032539 tcactattataagcaaaactccactttttatatacattgaataat 21032583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 36; Significance: 0.00000000002; HSPs: 20)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 212 - 271
Target Start/End: Original strand, 22720498 - 22720557
Alignment:
Q  212 atatactccctctcatcactattataaataaaacttcactttttagatacattgaataat 271  Q
    ||||| |||||| | ||||||||||||| |||| | ||||||||||||||||||||||||    
T  22720498 atatagtccctcccgtcactattataaacaaaattccactttttagatacattgaataat 22720557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 82 - 129
Target Start/End: Original strand, 51369221 - 51369268
Alignment:
Q  82 ttgaactttgtcacatgaaattacaaaggcaaactcttgtcaatgaac 129  Q
    |||||||||||| ||||||||||||||| |||||||||| ||||||||    
T  51369221 ttgaactttgtcccatgaaattacaaagtcaaactcttgccaatgaac 51369268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 214 - 271
Target Start/End: Original strand, 2198042 - 2198099
Alignment:
Q  214 atactccctctcatcactattataaataaaacttcactttttagatacattgaataat 271  Q
    ||||||||||   ||||||||||||  |||||| ||||||||||||||||||||||||    
T  2198042 atactccctccggtcactattataagcaaaactccactttttagatacattgaataat 2198099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 215 - 268
Target Start/End: Complemental strand, 41622242 - 41622189
Alignment:
Q  215 tactccctctcatcactattataaataaaacttcactttttagatacattgaat 268  Q
    |||||||||  |||||  |||||||||||| |||||||||||||||||||||||    
T  41622242 tactccctccgatcacagttataaataaaagttcactttttagatacattgaat 41622189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 214 - 271
Target Start/End: Original strand, 52673592 - 52673649
Alignment:
Q  214 atactccctctcatcactattataaataaaacttcactttttagatacattgaataat 271  Q
    |||||||||| | ||||||||||||  ||||||| |||||||||||| ||||||||||    
T  52673592 atactccctcccgtcactattataagcaaaactttactttttagatatattgaataat 52673649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 227 - 271
Target Start/End: Complemental strand, 22720639 - 22720595
Alignment:
Q  227 tcactattataaataaaacttcactttttagatacattgaataat 271  Q
    ||||||||||||  |||||| ||||||||||||||||||||||||    
T  22720639 tcactattataagcaaaactccactttttagatacattgaataat 22720595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 227 - 271
Target Start/End: Complemental strand, 52673731 - 52673687
Alignment:
Q  227 tcactattataaataaaacttcactttttagatacattgaataat 271  Q
    ||||||||||||  |||| ||||||||||||||||||||||||||    
T  52673731 tcactattataagcaaaatttcactttttagatacattgaataat 52673687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 214 - 271
Target Start/End: Original strand, 15794757 - 15794815
Alignment:
Q  214 atactccctctcatcactattataaataaaacttcact-ttttagatacattgaataat 271  Q
    ||||||||||  ||||||||||||| ||||| |||| | ||||||||||||||||||||    
T  15794757 atactccctccaatcactattataagtaaaatttcattgttttagatacattgaataat 15794815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 222 - 264
Target Start/End: Complemental strand, 50485833 - 50485791
Alignment:
Q  222 tctcatcactattataaataaaacttcactttttagatacatt 264  Q
    ||||||||||||||||||  ||| |||||||||||||||||||    
T  50485833 tctcatcactattataaactaaatttcactttttagatacatt 50485791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 226 - 263
Target Start/End: Original strand, 39396827 - 39396864
Alignment:
Q  226 atcactattataaataaaacttcactttttagatacat 263  Q
    |||||||||||||| |||||||||||||||| ||||||    
T  39396827 atcactattataaacaaaacttcactttttaaatacat 39396864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 215 - 271
Target Start/End: Complemental strand, 2198180 - 2198125
Alignment:
Q  215 tactccctctcatcactattataaataaaacttcactttttagatacattgaataat 271  Q
    |||||||||  |||||||||| ||  |||||||||||||||| ||||||||||||||    
T  2198180 tactccctccgatcactatta-aagcaaaacttcactttttaaatacattgaataat 2198125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 214 - 270
Target Start/End: Original strand, 22020110 - 22020166
Alignment:
Q  214 atactccctctcatcactattataaataaaacttcactttttagatacattgaataa 270  Q
    |||||||||||  ||||||||||||  |||| |||||||||||||| |||| |||||    
T  22020110 atactccctctggtcactattataagcaaaagttcactttttagattcattcaataa 22020166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 227 - 271
Target Start/End: Complemental strand, 22768277 - 22768233
Alignment:
Q  227 tcactattataaataaaacttcactttttagatacattgaataat 271  Q
    |||||| |||||| || ||| ||||||||||||||||||||||||    
T  22768277 tcactactataaacaacactacactttttagatacattgaataat 22768233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 227 - 271
Target Start/End: Original strand, 22923666 - 22923710
Alignment:
Q  227 tcactattataaataaaacttcactttttagatacattgaataat 271  Q
    ||||||||||||  |||||| || |||||||||||||||||||||    
T  22923666 tcactattataagcaaaactccaatttttagatacattgaataat 22923710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 227 - 271
Target Start/End: Original strand, 22928319 - 22928363
Alignment:
Q  227 tcactattataaataaaacttcactttttagatacattgaataat 271  Q
    ||||||||||||  |||||| || |||||||||||||||||||||    
T  22928319 tcactattataagcaaaactccaatttttagatacattgaataat 22928363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 227 - 271
Target Start/End: Original strand, 22984598 - 22984642
Alignment:
Q  227 tcactattataaataaaacttcactttttagatacattgaataat 271  Q
    ||||||||||||  |||||| || |||||||||||||||||||||    
T  22984598 tcactattataagcaaaactccaatttttagatacattgaataat 22984642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 227 - 271
Target Start/End: Original strand, 22998186 - 22998230
Alignment:
Q  227 tcactattataaataaaacttcactttttagatacattgaataat 271  Q
    ||||||||||||  |||||| || |||||||||||||||||||||    
T  22998186 tcactattataagcaaaactccaatttttagatacattgaataat 22998230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 227 - 271
Target Start/End: Original strand, 35884359 - 35884403
Alignment:
Q  227 tcactattataaataaaacttcactttttagatacattgaataat 271  Q
    ||||||||||||| |||  || |||||||||||||||||||||||    
T  35884359 tcactattataaacaaactttgactttttagatacattgaataat 35884403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 227 - 271
Target Start/End: Complemental strand, 35884462 - 35884418
Alignment:
Q  227 tcactattataaataaaacttcactttttagatacattgaataat 271  Q
    ||||||||||||| |||  || |||||||||||||||||||||||    
T  35884462 tcactattataaacaaactttgactttttagatacattgaataat 35884418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 214 - 270
Target Start/End: Original strand, 39897103 - 39897159
Alignment:
Q  214 atactccctctcatcactattataaataaaacttcactttttagatacattgaataa 270  Q
    |||| ||||||| ||||||||| || |||||  ||||||||||||| ||||||||||    
T  39897103 atacaccctctcgtcactattagaagtaaaaaatcactttttagattcattgaataa 39897159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 35; Significance: 0.0000000001; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 214 - 268
Target Start/End: Original strand, 8352129 - 8352183
Alignment:
Q  214 atactccctctcatcactattataaataaaacttcactttttagatacattgaat 268  Q
    |||||||||||  ||||||||||||  ||||||||| ||||||||||||||||||    
T  8352129 atactccctctggtcactattataagcaaaacttcattttttagatacattgaat 8352183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 227 - 271
Target Start/End: Original strand, 26468301 - 26468345
Alignment:
Q  227 tcactattataaataaaacttcactttttagatacattgaataat 271  Q
    ||||||||||||| |||| ||||||||||| ||||||||||||||    
T  26468301 tcactattataaacaaaatttcactttttaaatacattgaataat 26468345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 227 - 264
Target Start/End: Complemental strand, 3384356 - 3384319
Alignment:
Q  227 tcactattataaataaaacttcactttttagatacatt 264  Q
    |||||| ||||||||||| |||||||||||||||||||    
T  3384356 tcactaatataaataaaaattcactttttagatacatt 3384319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 217 - 270
Target Start/End: Complemental strand, 32796889 - 32796836
Alignment:
Q  217 ctccctctcatcactattataaataaaacttcactttttagatacattgaataa 270  Q
    |||||||  |||||||||||||| |||| |||||||||||||| |||| |||||    
T  32796889 ctccctccgatcactattataaacaaaaattcactttttagattcatttaataa 32796836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 227 - 271
Target Start/End: Original strand, 31635752 - 31635796
Alignment:
Q  227 tcactattataaataaaacttcactttttagatacattgaataat 271  Q
    |||| |||| || ||||||||||||||||| ||||||||||||||    
T  31635752 tcaccattacaagtaaaacttcactttttatatacattgaataat 31635796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 226 - 271
Target Start/End: Original strand, 39969771 - 39969818
Alignment:
Q  226 atcactattataaataaaacttcacttttt--agatacattgaataat 271  Q
    |||| ||||||||||||||||||| |||||  ||||||||||||||||    
T  39969771 atcaatattataaataaaacttcatttttttaagatacattgaataat 39969818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 33; Significance: 0.000000001; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 231 - 271
Target Start/End: Original strand, 50334932 - 50334972
Alignment:
Q  231 tattataaataaaacttcactttttagatacattgaataat 271  Q
    ||||||||| |||||||||| ||||||||||||||||||||    
T  50334932 tattataaacaaaacttcacattttagatacattgaataat 50334972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 79 - 120
Target Start/End: Complemental strand, 11532722 - 11532681
Alignment:
Q  79 tatttgaactttgtcacatgaaattacaaaggcaaactcttg 120  Q
    |||||||||||| || ||||||||||||||| ||||||||||    
T  11532722 tatttgaactttatctcatgaaattacaaagtcaaactcttg 11532681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 214 - 271
Target Start/End: Complemental strand, 36344582 - 36344525
Alignment:
Q  214 atactccctctcatcactattataaataaaacttcactttttagatacattgaataat 271  Q
    ||||||||||  |||| ||||||||| |||| |  |||||||||||||||||||||||    
T  36344582 atactccctccgatcaatattataaacaaaattatactttttagatacattgaataat 36344525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 226 - 270
Target Start/End: Complemental strand, 39836999 - 39836955
Alignment:
Q  226 atcactattataaataaaacttcactttttagatacattgaataa 270  Q
    ||||||||||||||||||| || ||||||||||| |||| |||||    
T  39836999 atcactattataaataaaagtttactttttagattcattcaataa 39836955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 31; Significance: 0.00000002; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 229 - 271
Target Start/End: Complemental strand, 1214067 - 1214025
Alignment:
Q  229 actattataaataaaacttcactttttagatacattgaataat 271  Q
    ||||||||||||||||||  |||||||||||| ||||||||||    
T  1214067 actattataaataaaactctactttttagatatattgaataat 1214025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 227 - 271
Target Start/End: Complemental strand, 6197959 - 6197915
Alignment:
Q  227 tcactattataaataaaacttcactttttagatacattgaataat 271  Q
    ||||||||||||  ||||||| |||||||||||||||| ||||||    
T  6197959 tcactattataagcaaaactttactttttagatacattaaataat 6197915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 227 - 271
Target Start/End: Original strand, 43140553 - 43140597
Alignment:
Q  227 tcactattataaataaaacttcactttttagatacattgaataat 271  Q
    ||||||||||||| ||||| | |||| ||||||||||||||||||    
T  43140553 tcactattataaacaaaacattacttattagatacattgaataat 43140597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 31; Significance: 0.00000002; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 227 - 269
Target Start/End: Complemental strand, 10495777 - 10495735
Alignment:
Q  227 tcactattataaataaaacttcactttttagatacattgaata 269  Q
    ||||||||||||  |||| ||||||||||||||||||||||||    
T  10495777 tcactattataagcaaaatttcactttttagatacattgaata 10495735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 227 - 264
Target Start/End: Complemental strand, 13953899 - 13953862
Alignment:
Q  227 tcactattataaataaaacttcactttttagatacatt 264  Q
    ||||||||||||| |||||||||| |||||||||||||    
T  13953899 tcactattataaacaaaacttcacattttagatacatt 13953862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 227 - 264
Target Start/End: Complemental strand, 14095106 - 14095069
Alignment:
Q  227 tcactattataaataaaacttcactttttagatacatt 264  Q
    ||||||||||||| |||||||||| |||||||||||||    
T  14095106 tcactattataaacaaaacttcacattttagatacatt 14095069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 68 - 128
Target Start/End: Complemental strand, 20493367 - 20493307
Alignment:
Q  68 taacaagaatatatttgaactttgtcacatgaaattacaaaggcaaactcttgtcaatgaa 128  Q
    |||||||| | ||||| ||||||||  ||||||||||||||| |||||| ||| |||||||    
T  20493367 taacaagagtctatttaaactttgttccatgaaattacaaagtcaaacttttgccaatgaa 20493307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 227 - 271
Target Start/End: Original strand, 43100756 - 43100800
Alignment:
Q  227 tcactattataaataaaacttcactttttagatacattgaataat 271  Q
    ||||||||||||  |||| |||| |||||||||||||||||||||    
T  43100756 tcactattataagcaaaaattcattttttagatacattgaataat 43100800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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