View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8628_low_11 (Length: 267)

Name: NF8628_low_11
Description: NF8628
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8628_low_11
NF8628_low_11
[»] chr6 (12 HSPs)
chr6 (22-267)||(14589358-14589603)
chr6 (22-267)||(14623016-14623261)
chr6 (33-189)||(12846924-12847080)
chr6 (201-267)||(7632850-7632916)
chr6 (213-267)||(33123017-33123071)
chr6 (201-267)||(3989590-3989656)
chr6 (217-267)||(26388201-26388251)
chr6 (218-259)||(14623289-14623330)
chr6 (213-258)||(30629597-30629642)
chr6 (218-258)||(14589632-14589672)
chr6 (202-266)||(26388272-26388336)
chr6 (201-257)||(32124214-32124270)
[»] chr4 (22 HSPs)
chr4 (32-198)||(29954945-29955111)
chr4 (31-200)||(51369340-51369509)
chr4 (201-266)||(2198042-2198107)
chr4 (202-266)||(22720587-22720651)
chr4 (200-267)||(52673678-52673745)
chr4 (202-267)||(22923654-22923719)
chr4 (202-267)||(22928307-22928372)
chr4 (202-267)||(22984586-22984651)
chr4 (202-267)||(22998174-22998239)
chr4 (199-267)||(22720498-22720566)
chr4 (201-267)||(52673592-52673658)
chr4 (202-259)||(22768232-22768289)
chr4 (202-267)||(44626157-44626222)
chr4 (199-267)||(22768136-22768204)
chr4 (218-267)||(39396832-39396881)
chr4 (199-267)||(5970275-5970343)
chr4 (199-251)||(22923712-22923764)
chr4 (199-251)||(22928365-22928417)
chr4 (199-251)||(22984644-22984696)
chr4 (199-251)||(22998232-22998284)
chr4 (202-258)||(35884418-35884474)
chr4 (202-266)||(52299073-52299136)
[»] chr3 (6 HSPs)
chr3 (31-180)||(11532257-11532406)
chr3 (209-267)||(50334923-50334981)
chr3 (201-265)||(36344518-36344582)
chr3 (201-266)||(1779488-1779553)
chr3 (198-267)||(35239733-35239802)
chr3 (202-266)||(32186884-32186948)
[»] chr2 (7 HSPs)
chr2 (31-197)||(20493079-20493245)
chr2 (35-134)||(1355412-1355511)
chr2 (35-134)||(1362298-1362397)
chr2 (202-259)||(43100744-43100801)
chr2 (211-267)||(10495724-10495780)
chr2 (202-251)||(13953862-13953911)
chr2 (202-251)||(14095069-14095118)
[»] chr7 (11 HSPs)
chr7 (201-266)||(26982758-26982823)
chr7 (199-266)||(4132468-4132535)
chr7 (199-266)||(34840606-34840673)
chr7 (202-267)||(21857064-21857129)
chr7 (213-266)||(43250420-43250473)
chr7 (199-259)||(38646255-38646315)
chr7 (201-266)||(4132380-4132446)
chr7 (201-259)||(24155645-24155703)
chr7 (210-266)||(11602848-11602904)
chr7 (211-267)||(21587839-21587895)
chr7 (212-256)||(43250374-43250418)
[»] chr5 (6 HSPs)
chr5 (205-267)||(26221022-26221084)
chr5 (199-259)||(42364308-42364368)
chr5 (202-267)||(5240221-5240286)
chr5 (209-267)||(29486500-29486558)
chr5 (213-266)||(21032538-21032591)
chr5 (218-266)||(892562-892610)
[»] chr1 (6 HSPs)
chr1 (202-267)||(26468289-26468354)
chr1 (201-267)||(8352129-8352195)
chr1 (213-266)||(8352216-8352269)
chr1 (208-267)||(43731199-43731258)
chr1 (201-267)||(5368854-5368920)
chr1 (214-267)||(30800289-30800342)
[»] chr8 (5 HSPs)
chr8 (202-267)||(6197821-6197886)
chr8 (211-267)||(43140628-43140683)
chr8 (200-267)||(28205791-28205858)
chr8 (211-267)||(43140550-43140606)
chr8 (201-258)||(13325180-13325237)
[»] scaffold0155 (1 HSPs)
scaffold0155 (202-251)||(33971-34020)


Alignment Details
Target: chr6 (Bit Score: 242; Significance: 1e-134; HSPs: 12)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 22 - 267
Target Start/End: Original strand, 14589358 - 14589603
Alignment:
Q  22 tgtgttgctaaaacattgaggttggtaatagtggatgaggaaggaagtatttacaggaacaacgccaaagaaatgggaaaggttgtgagttcaaaagatc 121  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  14589358 tgtgttgctaaaacattgaggttggtaatagtggatgaggaaggaagtatttacaggaacaatgccaaagaaatgggaaaggttgtgagttcaaaagatc 14589457  T
Q  122 ttcacaatgaatacattaaaaacttcattgccactcttcaaaagtttagagttcattccgacaattaagcatatttcatatactcccttcggtcattatt 221  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14589458 ttcacaatgaatacattaaaaacttcattgccactcttcaaaagtttagagttcattccgacaattaagcatatttcatatactcccttcggtcattatt 14589557  T
Q  222 ataaacaaaacttcacttttcagatacattgaataattcatgtatc 267  Q
    ||||||||||||||||||||||||||||||||||||||||||||||    
T  14589558 ataaacaaaacttcacttttcagatacattgaataattcatgtatc 14589603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 22 - 267
Target Start/End: Original strand, 14623016 - 14623261
Alignment:
Q  22 tgtgttgctaaaacattgaggttggtaatagtggatgaggaaggaagtatttacaggaacaacgccaaagaaatgggaaaggttgtgagttcaaaagatc 121  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||    
T  14623016 tgtgttgctaaaacattgaggttggtaatagtggatgaggaaggaagtatttacaggaacaatgccaaagacatgggaaaggttgtgagttcaaaagatc 14623115  T
Q  122 ttcacaatgaatacattaaaaacttcattgccactcttcaaaagtttagagttcattccgacaattaagcatatttcatatactcccttcggtcattatt 221  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| | |||||||||||||    
T  14623116 ttcacaatgaatacattaaaaatttcattgccactcttcaaaagtttagagttcattccgacaattaaacatatttcatatacttcattcggtcattatt 14623215  T
Q  222 ataaacaaaacttcacttttcagatacattgaataattcatgtatc 267  Q
    |||| |||||||||||||||||||||||||||||||||||||||||    
T  14623216 ataagcaaaacttcacttttcagatacattgaataattcatgtatc 14623261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 33 - 189
Target Start/End: Original strand, 12846924 - 12847080
Alignment:
Q  33 aacattgaggttggtaatagtggatgaggaaggaagtatttacaggaacaacgccaaagaaatgggaaaggttgtgagttcaaaagatcttcacaatgaa 132  Q
    |||||||||||| | |||| ||||||  ||||||| ||||||||||||||| || ||||| ||||| ||| || | ||||||||||| ||||||||  ||    
T  12846924 aacattgaggttagcaataatggatgccgaaggaattatttacaggaacaatgcaaaagagatgggcaagattttcagttcaaaagaacttcacaaaaaa 12847023  T
Q  133 tacattaaaaacttcattgccactcttcaaaagtttagagttcattccgacaattaa 189  Q
    |||||| || | ||||||||  |||||||||||| ||| |||||||| || ||||||    
T  12847024 tacattgaagatttcattgctgctcttcaaaagtatagggttcattctgagaattaa 12847080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 201 - 267
Target Start/End: Complemental strand, 7632916 - 7632850
Alignment:
Q  201 atactcccttcggtcattattataaacaaaacttcacttttcagatacattgaataattcatgtatc 267  Q
    ||||||||| |||||||||||||||||||||||| |||||| ||||||| ||||||||| |||||||    
T  7632916 atactccctccggtcattattataaacaaaacttaactttttagatacactgaataattaatgtatc 7632850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 213 - 267
Target Start/End: Original strand, 33123017 - 33123071
Alignment:
Q  213 gtcattattataaacaaaacttcacttttcagatacattgaataattcatgtatc 267  Q
    ||||||||||||||||||||||||||||| | ||||||||||||||| |||||||    
T  33123017 gtcattattataaacaaaacttcactttttaaatacattgaataattaatgtatc 33123071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 201 - 267
Target Start/End: Complemental strand, 3989656 - 3989590
Alignment:
Q  201 atactcccttcggtcattattataaacaaaacttcacttttcagatacattgaataattcatgtatc 267  Q
    |||||| || ||| || |||||||| |||||||| ||| || ||||||||||||||||| |||||||    
T  3989656 atactcgctccggccactattataatcaaaacttaactattaagatacattgaataattgatgtatc 3989590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 217 - 267
Target Start/End: Original strand, 26388201 - 26388251
Alignment:
Q  217 ttattataaacaaaacttcacttttcagatacattgaataattcatgtatc 267  Q
    |||||||||||||||||  |||||| ||||| ||||||||||| |||||||    
T  26388201 ttattataaacaaaactctactttttagatatattgaataattaatgtatc 26388251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 218 - 259
Target Start/End: Complemental strand, 14623330 - 14623289
Alignment:
Q  218 tattataaacaaaacttcacttttcagatacattgaataatt 259  Q
    ||||||||| |||||||||||||| |||||||||||| ||||    
T  14623330 tattataaataaaacttcactttttagatacattgaaaaatt 14623289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 213 - 258
Target Start/End: Original strand, 30629597 - 30629642
Alignment:
Q  213 gtcattattataaacaaaacttcacttttcagatacattgaataat 258  Q
    |||| |||||||||||||| ||||||||| ||||| ||||||||||    
T  30629597 gtcactattataaacaaaatttcactttttagatagattgaataat 30629642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 218 - 258
Target Start/End: Complemental strand, 14589672 - 14589632
Alignment:
Q  218 tattataaacaaaacttcacttttcagatacattgaataat 258  Q
    ||||||||| ||||||| |||||| ||||||||||||||||    
T  14589672 tattataaataaaactttactttttagatacattgaataat 14589632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 202 - 266
Target Start/End: Complemental strand, 26388336 - 26388272
Alignment:
Q  202 tactcccttcggtcattattataaacaaaacttcacttttcagatacattgaataattcatgtat 266  Q
    |||||||| |||||| ||||||||  |||||| ||||||| | ||| ||||||||||| ||||||    
T  26388336 tactccctccggtcactattataagaaaaactccactttttatatatattgaataattaatgtat 26388272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 201 - 257
Target Start/End: Complemental strand, 32124270 - 32124214
Alignment:
Q  201 atactcccttcggtcattattataaacaaaacttcacttttcagatacattgaataa 257  Q
    |||||| |||||||||||||||||| ||||| || |||||| |||| |||| |||||    
T  32124270 atactctcttcggtcattattataagcaaaaattgactttttagattcattcaataa 32124214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 87; Significance: 9e-42; HSPs: 22)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 87; E-Value: 9e-42
Query Start/End: Original strand, 32 - 198
Target Start/End: Original strand, 29954945 - 29955111
Alignment:
Q  32 aaacattgaggttggtaatagtggatgaggaaggaagtatttacaggaacaacgccaaagaaatgggaaaggttgtgagttcaaaagatcttcacaatga 131  Q
    ||||||||||||||| |||||||||||||||||||||||| ||  |||| || |||||||| |||| ||||||| | |||||||||||||||||||||||    
T  29954945 aaacattgaggttggcaatagtggatgaggaaggaagtatgtatcggaataatgccaaagatatggaaaaggttttcagttcaaaagatcttcacaatga 29955044  T
Q  132 atacattaaaaacttcattgccactcttcaaaagtttagagttcattccgacaattaagcatatttc 198  Q
    |||||||||| |  |||||||  |||||||||||| |||||||| ||  | ||||||||||||||||    
T  29955045 atacattaaagatgtcattgctgctcttcaaaagtatagagttcgttatgtcaattaagcatatttc 29955111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 31 - 200
Target Start/End: Complemental strand, 51369509 - 51369340
Alignment:
Q  31 aaaacattgaggttggtaatagtggatgaggaaggaagtatttacaggaacaacgccaaagaaatgggaaaggttgtgagttcaaaagatcttcacaatg 130  Q
    ||||||||||||||||||||||||||||||||||| || |  | |||||| || || ||||| ||||||||  || | |||||||||||||||||||||     
T  51369509 aaaacattgaggttggtaatagtggatgaggaaggtagcacgtgcaggaaaaatgctaaagatatgggaaaaattttcagttcaaaagatcttcacaatc 51369410  T
Q  131 aatacattaaaaacttcattgccactcttcaaaagtttagagttcattccgacaattaagcatatttcat 200  Q
    ||||||||||| | || || ||  |||||||||||  ||||||||||||||||| |||||||||||||||    
T  51369409 aatacattaaagatttaatcgctgctcttcaaaagcatagagttcattccgacagttaagcatatttcat 51369340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 201 - 266
Target Start/End: Original strand, 2198042 - 2198107
Alignment:
Q  201 atactcccttcggtcattattataaacaaaacttcacttttcagatacattgaataattcatgtat 266  Q
    ||||||||| |||||| |||||||| ||||||| ||||||| ||||||||||||||||| ||||||    
T  2198042 atactccctccggtcactattataagcaaaactccactttttagatacattgaataattaatgtat 2198107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 202 - 266
Target Start/End: Complemental strand, 22720651 - 22720587
Alignment:
Q  202 tactcccttcggtcattattataaacaaaacttcacttttcagatacattgaataattcatgtat 266  Q
    |||||||| |||||| |||||||| ||||||| ||||||| ||||||||||||||||| ||||||    
T  22720651 tactccctccggtcactattataagcaaaactccactttttagatacattgaataattaatgtat 22720587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 200 - 267
Target Start/End: Complemental strand, 52673745 - 52673678
Alignment:
Q  200 tatactcccttcggtcattattataaacaaaacttcacttttcagatacattgaataattcatgtatc 267  Q
    |||||||  |||||||| |||||||| ||||| ||||||||| ||||||||||||||||| |||||||    
T  52673745 tatactcatttcggtcactattataagcaaaatttcactttttagatacattgaataattaatgtatc 52673678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 202 - 267
Target Start/End: Original strand, 22923654 - 22923719
Alignment:
Q  202 tactcccttcggtcattattataaacaaaacttcacttttcagatacattgaataattcatgtatc 267  Q
    |||||||| |||||| |||||||| ||||||| || |||| ||||||||||||||||| |||||||    
T  22923654 tactccctccggtcactattataagcaaaactccaatttttagatacattgaataattaatgtatc 22923719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 202 - 267
Target Start/End: Original strand, 22928307 - 22928372
Alignment:
Q  202 tactcccttcggtcattattataaacaaaacttcacttttcagatacattgaataattcatgtatc 267  Q
    |||||||| |||||| |||||||| ||||||| || |||| ||||||||||||||||| |||||||    
T  22928307 tactccctccggtcactattataagcaaaactccaatttttagatacattgaataattaatgtatc 22928372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 202 - 267
Target Start/End: Original strand, 22984586 - 22984651
Alignment:
Q  202 tactcccttcggtcattattataaacaaaacttcacttttcagatacattgaataattcatgtatc 267  Q
    |||||||| |||||| |||||||| ||||||| || |||| ||||||||||||||||| |||||||    
T  22984586 tactccctccggtcactattataagcaaaactccaatttttagatacattgaataattaatgtatc 22984651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 202 - 267
Target Start/End: Original strand, 22998174 - 22998239
Alignment:
Q  202 tactcccttcggtcattattataaacaaaacttcacttttcagatacattgaataattcatgtatc 267  Q
    |||||||| |||||| |||||||| ||||||| || |||| ||||||||||||||||| |||||||    
T  22998174 tactccctccggtcactattataagcaaaactccaatttttagatacattgaataattaatgtatc 22998239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 199 - 267
Target Start/End: Original strand, 22720498 - 22720566
Alignment:
Q  199 atatactcccttcggtcattattataaacaaaacttcacttttcagatacattgaataattcatgtatc 267  Q
    ||||| ||||| | |||| |||||||||||||| | ||||||| ||||||||||||||||| |||||||    
T  22720498 atatagtccctcccgtcactattataaacaaaattccactttttagatacattgaataattaatgtatc 22720566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 201 - 267
Target Start/End: Original strand, 52673592 - 52673658
Alignment:
Q  201 atactcccttcggtcattattataaacaaaacttcacttttcagatacattgaataattcatgtatc 267  Q
    ||||||||| | |||| |||||||| |||||||| |||||| ||||| ||||||||||| |||||||    
T  52673592 atactccctcccgtcactattataagcaaaactttactttttagatatattgaataattaatgtatc 52673658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 202 - 259
Target Start/End: Complemental strand, 22768289 - 22768232
Alignment:
Q  202 tactcccttcggtcattattataaacaaaacttcacttttcagatacattgaataatt 259  Q
    |||||||| |||||| || ||||||||| ||| ||||||| |||||||||||||||||    
T  22768289 tactccctccggtcactactataaacaacactacactttttagatacattgaataatt 22768232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 202 - 267
Target Start/End: Original strand, 44626157 - 44626222
Alignment:
Q  202 tactcccttcggtcattattataaacaaaacttcacttttcagatacattgaataattcatgtatc 267  Q
    |||||||| |||||| |||||||| ||||| || | |||||||||||||||||||| | |||||||    
T  44626157 tactccctccggtcactattataatcaaaattttatttttcagatacattgaataactaatgtatc 44626222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 199 - 267
Target Start/End: Original strand, 22768136 - 22768204
Alignment:
Q  199 atatactcccttcggtcattattataaacaaaacttcacttttcagatacattgaataattcatgtatc 267  Q
    |||| |||||| |||||| |||||||| ||||||| ||  ||| ||||||||||||||||| |||||||    
T  22768136 atatgctccctccggtcactattataagcaaaactccatattttagatacattgaataattaatgtatc 22768204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 218 - 267
Target Start/End: Original strand, 39396832 - 39396881
Alignment:
Q  218 tattataaacaaaacttcacttttcagatacattgaataattcatgtatc 267  Q
    |||||||||||||||||||||||| | |||||| | |||||| |||||||    
T  39396832 tattataaacaaaacttcactttttaaatacatgggataattaatgtatc 39396881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 199 - 267
Target Start/End: Original strand, 5970275 - 5970343
Alignment:
Q  199 atatactcccttcggtcattattataaacaaaacttcacttttcagatacattgaataattcatgtatc 267  Q
    ||||||||||||||||| |  |||||||  ||| || |||||| ||||||||||||||||  |||||||    
T  5970275 atatactcccttcggtcctatttataaaagaaagttgactttttagatacattgaataatgtatgtatc 5970343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 199 - 251
Target Start/End: Complemental strand, 22923764 - 22923712
Alignment:
Q  199 atatactcccttcggtcattattataaacaaaacttcacttttcagatacatt 251  Q
    ||||||||||| |||||| |||||||||||||| | || |||| |||||||||    
T  22923764 atatactccctccggtcactattataaacaaaattccattttttagatacatt 22923712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 199 - 251
Target Start/End: Complemental strand, 22928417 - 22928365
Alignment:
Q  199 atatactcccttcggtcattattataaacaaaacttcacttttcagatacatt 251  Q
    ||||||||||| |||||| |||||||||||||| | || |||| |||||||||    
T  22928417 atatactccctccggtcactattataaacaaaattccattttttagatacatt 22928365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 199 - 251
Target Start/End: Complemental strand, 22984696 - 22984644
Alignment:
Q  199 atatactcccttcggtcattattataaacaaaacttcacttttcagatacatt 251  Q
    ||||||||||| |||||| |||||||||||||| | || |||| |||||||||    
T  22984696 atatactccctccggtcactattataaacaaaattccattttttagatacatt 22984644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 199 - 251
Target Start/End: Complemental strand, 22998284 - 22998232
Alignment:
Q  199 atatactcccttcggtcattattataaacaaaacttcacttttcagatacatt 251  Q
    ||||||||||| |||||| |||||||||||||| | || |||| |||||||||    
T  22998284 atatactccctccggtcactattataaacaaaattccattttttagatacatt 22998232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 202 - 258
Target Start/End: Complemental strand, 35884474 - 35884418
Alignment:
Q  202 tactcccttcggtcattattataaacaaaacttcacttttcagatacattgaataat 258  Q
    |||||| | |||||| |||||||||||||  || |||||| ||||||||||||||||    
T  35884474 tactccttccggtcactattataaacaaactttgactttttagatacattgaataat 35884418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 202 - 266
Target Start/End: Original strand, 52299073 - 52299136
Alignment:
Q  202 tactcccttcggtcattattataaacaaaacttcacttttcagatacattgaataattcatgtat 266  Q
    ||||| |||| ||||||||||||| ||||| || |||||| | ||||||||||||||| ||||||    
T  52299073 tactctcttccgtcattattataagcaaaattttacttttta-atacattgaataattaatgtat 52299136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 82; Significance: 8e-39; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 31 - 180
Target Start/End: Original strand, 11532257 - 11532406
Alignment:
Q  31 aaaacattgaggttggtaatagtggatgaggaaggaagtatttacaggaacaacgccaaagaaatgggaaaggttgtgagttcaaaagatcttcacaatg 130  Q
    ||||||||||||||||||||| ||||||||||||||||||  ||||| ||||| |||||||| |||||||||||| | |||||||||||||||||||||     
T  11532257 aaaacattgaggttggtaataatggatgaggaaggaagtacgtacagaaacaatgccaaagatatgggaaaggttttcagttcaaaagatcttcacaatc 11532356  T
Q  131 aatacattaaaaacttcattgccactcttcaaaagtttagagttcattcc 180  Q
    |||||||| || | || ||||   |||||||||||| |||||||||||||    
T  11532357 aatacattgaagattttattgttgctcttcaaaagtatagagttcattcc 11532406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 209 - 267
Target Start/End: Original strand, 50334923 - 50334981
Alignment:
Q  209 ttcggtcattattataaacaaaacttcacttttcagatacattgaataattcatgtatc 267  Q
    |||||| | |||||||||||||||||||| ||| ||||||||||||||||| |||||||    
T  50334923 ttcggttaatattataaacaaaacttcacattttagatacattgaataattaatgtatc 50334981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 201 - 265
Target Start/End: Complemental strand, 36344582 - 36344518
Alignment:
Q  201 atactcccttcggtcattattataaacaaaacttcacttttcagatacattgaataattcatgta 265  Q
    ||||||||| || ||| |||||||||||||| |  |||||| ||||||||||||||||| |||||    
T  36344582 atactccctccgatcaatattataaacaaaattatactttttagatacattgaataattaatgta 36344518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 201 - 266
Target Start/End: Original strand, 1779488 - 1779553
Alignment:
Q  201 atactcccttcggtcattattataaacaaaacttcacttttcagatacattgaataattcatgtat 266  Q
    ||||||||| ||||||   ||||||||||||| | |||||| || |||||||||||||| ||||||    
T  1779488 atactccctccggtcacatttataaacaaaacataactttttaggtacattgaataattgatgtat 1779553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 198 - 267
Target Start/End: Complemental strand, 35239802 - 35239733
Alignment:
Q  198 catatactcccttcggtcattattataaacaaaacttcacttttcagatacattgaataattcatgtatc 267  Q
    |||||||||  |||||||| |||||||| ||||| || || ||| |||||||||||||| || |||||||    
T  35239802 catatactctgttcggtcactattataaccaaaatttgacattttagatacattgaatagttaatgtatc 35239733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 202 - 266
Target Start/End: Original strand, 32186884 - 32186948
Alignment:
Q  202 tactcccttcggtcattattataaacaaaacttcacttttcagatacattgaataattcatgtat 266  Q
    ||||| || |||||| | |||||||||||| ||||||||| | |||||| |||||||| ||||||    
T  32186884 tactctctccggtcactgttataaacaaaatttcactttttaaatacatggaataattaatgtat 32186948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 79; Significance: 5e-37; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 31 - 197
Target Start/End: Original strand, 20493079 - 20493245
Alignment:
Q  31 aaaacattgaggttggtaatagtggatgaggaaggaagtatttacaggaacaacgccaaagaaatgggaaaggttgtgagttcaaaagatcttcacaatg 130  Q
    |||||||||||||||| |||||||||||||||||||||||| || || || || |||||||| ||||||||| || |  |||||||||||||||||||||    
T  20493079 aaaacattgaggttggcaatagtggatgaggaaggaagtatctatagaaaaaatgccaaagatatgggaaagattttcggttcaaaagatcttcacaatg 20493178  T
Q  131 aatacattaaaaacttcattgccactcttcaaaagtttagagttcattccgacaattaagcatattt 197  Q
    |||||||||||   |||||||   |||| |||||   ||||||||||||| ||||||||||||||||    
T  20493179 aatacattaaaggtttcattgatgctctccaaaaacatagagttcattccaacaattaagcatattt 20493245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 35 - 134
Target Start/End: Original strand, 1355412 - 1355511
Alignment:
Q  35 cattgaggttggtaatagtggatgaggaaggaagtatttacaggaacaacgccaaagaaatgggaaaggttgtgagttcaaaagatcttcacaatgaata 134  Q
    |||||||||||| ||| ||||||||||||||||||| || ||||||||| || |||||  |||| |||||| | |||||||||||| |||||||| ||||    
T  1355412 cattgaggttggcaattgtggatgaggaaggaagtagtttcaggaacaatgctaaagagttggggaaggttttcagttcaaaagatattcacaatcaata 1355511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 35 - 134
Target Start/End: Original strand, 1362298 - 1362397
Alignment:
Q  35 cattgaggttggtaatagtggatgaggaaggaagtatttacaggaacaacgccaaagaaatgggaaaggttgtgagttcaaaagatcttcacaatgaata 134  Q
    |||||||||||| ||| ||||||||||||||||||| || ||||||||| || |||||  |||| || ||| | |||||||||||| |||| ||| ||||    
T  1362298 cattgaggttggcaattgtggatgaggaaggaagtagtttcaggaacaatgctaaagagttggggaaagttttcagttcaaaagatattcataatcaata 1362397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 202 - 259
Target Start/End: Original strand, 43100744 - 43100801
Alignment:
Q  202 tactcccttcggtcattattataaacaaaacttcacttttcagatacattgaataatt 259  Q
    ||||||||||||||| |||||||| ||||| |||| |||| |||||||||||||||||    
T  43100744 tactcccttcggtcactattataagcaaaaattcattttttagatacattgaataatt 43100801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 211 - 267
Target Start/End: Complemental strand, 10495780 - 10495724
Alignment:
Q  211 cggtcattattataaacaaaacttcacttttcagatacattgaataattcatgtatc 267  Q
    |||||| |||||||| ||||| ||||||||| |||||||||||||| || |||||||    
T  10495780 cggtcactattataagcaaaatttcactttttagatacattgaatatttaatgtatc 10495724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 202 - 251
Target Start/End: Complemental strand, 13953911 - 13953862
Alignment:
Q  202 tactcccttcggtcattattataaacaaaacttcacttttcagatacatt 251  Q
    |||||| | |||||| |||||||||||||||||||| ||| |||||||||    
T  13953911 tactccttccggtcactattataaacaaaacttcacattttagatacatt 13953862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 202 - 251
Target Start/End: Complemental strand, 14095118 - 14095069
Alignment:
Q  202 tactcccttcggtcattattataaacaaaacttcacttttcagatacatt 251  Q
    |||||| | |||||| |||||||||||||||||||| ||| |||||||||    
T  14095118 tactccttccggtcactattataaacaaaacttcacattttagatacatt 14095069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 46; Significance: 3e-17; HSPs: 11)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 201 - 266
Target Start/End: Original strand, 26982758 - 26982823
Alignment:
Q  201 atactcccttcggtcattattataaacaaaacttcacttttcagatacattgaataattcatgtat 266  Q
    ||||| |||||||||| |||||||| ||||||||||||||| ||||||||||||||||| ||||||    
T  26982758 atacttccttcggtcactattataagcaaaacttcactttttagatacattgaataattaatgtat 26982823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 199 - 266
Target Start/End: Complemental strand, 4132535 - 4132468
Alignment:
Q  199 atatactcccttcggtcattattataaacaaaacttcacttttcagatacattgaataattcatgtat 266  Q
    ||||||| |||  ||||||||||||||||||||||| |||||| |||||||||||||| || ||||||    
T  4132535 atatacttcctctggtcattattataaacaaaacttaactttttagatacattgaatatttaatgtat 4132468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 199 - 266
Target Start/End: Original strand, 34840606 - 34840673
Alignment:
Q  199 atatactcccttcggtcattattataaacaaaacttcacttttcagatacattgaataattcatgtat 266  Q
    ||||||||||| ||||||||||||||| ||||| ||||||||| |||| |||| ||||| | ||||||    
T  34840606 atatactccctccggtcattattataagcaaaagttcactttttagattcattcaataaatgatgtat 34840673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 202 - 267
Target Start/End: Original strand, 21857064 - 21857129
Alignment:
Q  202 tactcccttcggtcattattataaacaaaacttcacttttcagatacattgaataattcatgtatc 267  Q
    |||||||| |||||| |||||||| ||||| || |||||| ||| ||||||||||||| |||||||    
T  21857064 tactccctccggtcactattataagcaaaagtttactttttagacacattgaataattaatgtatc 21857129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 213 - 266
Target Start/End: Complemental strand, 43250473 - 43250420
Alignment:
Q  213 gtcattattataaacaaaacttcacttttcagatacattgaataattcatgtat 266  Q
    |||| |||||||| |||||||| |||||| ||||||||||||||||| ||||||    
T  43250473 gtcactattataagcaaaactttactttttagatacattgaataattaatgtat 43250420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 199 - 259
Target Start/End: Complemental strand, 38646315 - 38646255
Alignment:
Q  199 atatactcccttcggtcattattataaacaaaacttcacttttcagatacattgaataatt 259  Q
    |||||||||||  ||||| |||||||| |||||||||||| || ||||| |||||||||||    
T  38646315 atatactccctctggtcactattataagcaaaacttcactatttagatatattgaataatt 38646255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 201 - 266
Target Start/End: Original strand, 4132380 - 4132446
Alignment:
Q  201 atactcccttcggtcattattataaacaaaacttcacttttc-agatacattgaataattcatgtat 266  Q
    ||||||| | |||||| |||||||| ||||| |||||||||  ||||||||||||||||| ||||||    
T  4132380 atactccatccggtcaatattataagcaaaatttcacttttttagatacattgaataattaatgtat 4132446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 201 - 259
Target Start/End: Complemental strand, 24155703 - 24155645
Alignment:
Q  201 atactcccttcggtcattattataaacaaaacttcacttttcagatacattgaataatt 259  Q
    |||||||||||  ||| ||| ||||||||||||||| |||| ||||||||| |||||||    
T  24155703 atactcccttctatcactatcataaacaaaacttcaatttttagatacattaaataatt 24155645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 210 - 266
Target Start/End: Complemental strand, 11602904 - 11602848
Alignment:
Q  210 tcggtcattattataaacaaaacttcacttttcagatacattgaataattcatgtat 266  Q
    ||||||| |||||||||||||| ||||||||| |||| |||| ||||| | ||||||    
T  11602904 tcggtcactattataaacaaaagttcactttttagattcattcaataaatgatgtat 11602848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 211 - 267
Target Start/End: Original strand, 21587839 - 21587895
Alignment:
Q  211 cggtcattattataaacaaaacttcacttttcagatacattgaataattcatgtatc 267  Q
    |||||| |||||||| ||||||||||||||  |||| |||| ||||||| |||||||    
T  21587839 cggtcactattataagcaaaacttcactttcaagatgcattaaataattaatgtatc 21587895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 212 - 256
Target Start/End: Original strand, 43250374 - 43250418
Alignment:
Q  212 ggtcattattataaacaaaacttcacttttcagatacattgaata 256  Q
    ||||| |||||||| |||||||| |||||| ||||||||||||||    
T  43250374 ggtcactattataagcaaaactttactttttagatacattgaata 43250418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 205 - 267
Target Start/End: Original strand, 26221022 - 26221084
Alignment:
Q  205 tcccttcggtcattattataaacaaaacttcacttttcagatacattgaataattcatgtatc 267  Q
    ||||| |||||| ||||||||||||||||| |||||| ||||||||||||||||| |||||||    
T  26221022 tccctccggtcaatattataaacaaaactttactttttagatacattgaataattaatgtatc 26221084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 199 - 259
Target Start/End: Complemental strand, 42364368 - 42364308
Alignment:
Q  199 atatactcccttcggtcattattataaacaaaacttcacttttcagatacattgaataatt 259  Q
    ||||||||| | |||||| |||||||| ||||||||||||||| |||||||||||||||||    
T  42364368 atatactccttccggtcactattataagcaaaacttcactttttagatacattgaataatt 42364308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 202 - 267
Target Start/End: Original strand, 5240221 - 5240286
Alignment:
Q  202 tactcccttcggtcattattataaacaaaacttcacttttcagatacattgaataattcatgtatc 267  Q
    |||||||| |||||| |||||||| ||||| || | |||| ||||||||||||||||| |||||||    
T  5240221 tactccctccggtcactattataagcaaaatttgattttttagatacattgaataattaatgtatc 5240286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 209 - 267
Target Start/End: Original strand, 29486500 - 29486558
Alignment:
Q  209 ttcggtcattattataaacaaaacttcacttttcagatacattgaataattcatgtatc 267  Q
    |||| ||| |||||||| ||||| ||||| ||| ||||||||||||||||| |||||||    
T  29486500 ttcgatcactattataagcaaaatttcacattttagatacattgaataattaatgtatc 29486558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 213 - 266
Target Start/End: Original strand, 21032538 - 21032591
Alignment:
Q  213 gtcattattataaacaaaacttcacttttcagatacattgaataattcatgtat 266  Q
    |||| |||||||| ||||||| ||||||| | ||||||||||||||| ||||||    
T  21032538 gtcactattataagcaaaactccactttttatatacattgaataattaatgtat 21032591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 218 - 266
Target Start/End: Original strand, 892562 - 892610
Alignment:
Q  218 tattataaacaaaacttcacttttcagatacattgaataattcatgtat 266  Q
    |||||||| ||||| ||||||||| |||| |||||||||||| ||||||    
T  892562 tattataagcaaaaattcactttttagattcattgaataattaatgtat 892610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 202 - 267
Target Start/End: Original strand, 26468289 - 26468354
Alignment:
Q  202 tactcccttcggtcattattataaacaaaacttcacttttcagatacattgaataattcatgtatc 267  Q
    |||||| |||||||| |||||||||||||| ||||||||| | ||||||||||||||| |||||||    
T  26468289 tactccattcggtcactattataaacaaaatttcactttttaaatacattgaataattaatgtatc 26468354  T

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Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 201 - 267
Target Start/End: Original strand, 8352129 - 8352195
Alignment:
Q  201 atactcccttcggtcattattataaacaaaacttcacttttcagatacattgaataattcatgtatc 267  Q
    |||||||||  ||||| |||||||| |||||||||| |||| ||||||||||||| ||| |||||||    
T  8352129 atactccctctggtcactattataagcaaaacttcattttttagatacattgaatgattaatgtatc 8352195  T

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Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 213 - 266
Target Start/End: Complemental strand, 8352269 - 8352216
Alignment:
Q  213 gtcattattataaacaaaacttcacttttcagatacattgaataattcatgtat 266  Q
    ||||||||||||| ||||||||| ||||| ||||| ||||||||||| ||||||    
T  8352269 gtcattattataagcaaaacttccctttttagatatattgaataattaatgtat 8352216  T

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Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 208 - 267
Target Start/End: Complemental strand, 43731258 - 43731199
Alignment:
Q  208 cttcggtcattattataaacaaaacttcacttttcagatacattgaataattcatgtatc 267  Q
    ||||||| |||||||||| ||||| |||| |||| |||||||||||||| || |||||||    
T  43731258 cttcggttattattataagcaaaatttcattttttagatacattgaatagttaatgtatc 43731199  T

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Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 201 - 267
Target Start/End: Complemental strand, 5368920 - 5368854
Alignment:
Q  201 atactcccttcggtcattattataaacaaaacttcacttttcagatacattgaataattcatgtatc 267  Q
    ||||||||| |||||||  |||||| ||||| || |||||| |||| |||||||||||| |||||||    
T  5368920 atactccctccggtcatatttataagcaaaaattaactttttagatgcattgaataattaatgtatc 5368854  T

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Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 214 - 267
Target Start/End: Complemental strand, 30800342 - 30800289
Alignment:
Q  214 tcattattataaacaaaacttcacttttcagatacattgaataattcatgtatc 267  Q
    ||||| ||||||||||||||  |||||| ||||| ||||||||||| |||||||    
T  30800342 tcattgttataaacaaaactctactttttagatatattgaataattaatgtatc 30800289  T

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Target: chr8 (Bit Score: 38; Significance: 0.000000000002; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 202 - 267
Target Start/End: Original strand, 6197821 - 6197886
Alignment:
Q  202 tactcccttcggtcattattataaacaaaacttcacttttcagatacattgaataattcatgtatc 267  Q
    |||||||| ||||||||||||||| ||||||| ||||||| ||||||||| |||| || |||||||    
T  6197821 tactccctccggtcattattataagcaaaactccactttttagatacattaaatagttaatgtatc 6197886  T

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Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 211 - 267
Target Start/End: Complemental strand, 43140683 - 43140628
Alignment:
Q  211 cggtcattattataaacaaaacttcacttttcagatacattgaataattcatgtatc 267  Q
    |||||||||||||||||||||||||| |||| |||||| |||||||||| |||||||    
T  43140683 cggtcattattataaacaaaacttcattttttagatac-ttgaataattaatgtatc 43140628  T

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Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 200 - 267
Target Start/End: Original strand, 28205791 - 28205858
Alignment:
Q  200 tatactcccttcggtcattattataaacaaaacttcacttttcagatacattgaataattcatgtatc 267  Q
    |||||||||| ||||   |||||||||||||| || | |||||||||||||||||||||| |||||||    
T  28205791 tatactccctccggttgctattataaacaaaatttaatttttcagatacattgaataattaatgtatc 28205858  T

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Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 211 - 267
Target Start/End: Original strand, 43140550 - 43140606
Alignment:
Q  211 cggtcattattataaacaaaacttcacttttcagatacattgaataattcatgtatc 267  Q
    |||||| ||||||||||||||| | |||| | ||||||||||||||||| |||||||    
T  43140550 cggtcactattataaacaaaacattacttattagatacattgaataattaatgtatc 43140606  T

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Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 201 - 258
Target Start/End: Complemental strand, 13325237 - 13325180
Alignment:
Q  201 atactcccttcggtcattattataaacaaaacttcacttttcagatacattgaataat 258  Q
    ||||||||| | |||||||||||||  |||||||||||||| || || ||||||||||    
T  13325237 atactccctcctgtcattattataaggaaaacttcactttttaggtatattgaataat 13325180  T

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Target: scaffold0155 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: scaffold0155
Description:

Target: scaffold0155; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 202 - 251
Target Start/End: Complemental strand, 34020 - 33971
Alignment:
Q  202 tactcccttcggtcattattataaacaaaacttcacttttcagatacatt 251  Q
    ||||| |||| |||||||||| || ||||||||||||||| |||||||||    
T  34020 tactcgcttctgtcattattacaagcaaaacttcactttttagatacatt 33971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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