View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8628_low_12 (Length: 252)
Name: NF8628_low_12
Description: NF8628
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8628_low_12 |
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Alignment Details
Target: chr3 (Bit Score: 215; Significance: 1e-118; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 1 - 235
Target Start/End: Complemental strand, 1087371 - 1087137
Alignment:
| Q |
1 |
caacaaagtatcacaaggaaaatcaaaaccttgccataagaaattattactttgttgatcagtattgttgttggctttgattacaaagtttccattgtct |
100 |
Q |
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| T |
1087371 |
caacaaagtatcacaaggaaaatcaaaaccttgccataagaaattattactttgttgatcagtattgttgttggctttgattacaaagtttccattgtct |
1087272 |
T |
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| Q |
101 |
aatagttgagcaacatgagaacttgtagttgacaaagattgtgttgtgatgtttgttgaccaaacaagagtttgattgttgtcggtaagtatttcaaggt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||| |
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| T |
1087271 |
aatagttgagcaacatgagaacttgtagttgacaaagattgtgttgtgatgtttgttgaccaaacaagtgtttgattgttgttggtaagtatttcaaggt |
1087172 |
T |
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| Q |
201 |
ttcctttattgcttatgatcaacatggttgagttg |
235 |
Q |
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|||| | |||||| ||||||||||||||||||||| |
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| T |
1087171 |
ttccatcattgctcatgatcaacatggttgagttg |
1087137 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 1 - 235
Target Start/End: Complemental strand, 1103927 - 1103693
Alignment:
| Q |
1 |
caacaaagtatcacaaggaaaatcaaaaccttgccataagaaattattactttgttgatcagtattgttgttggctttgattacaaagtttccattgtct |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1103927 |
caacaaagtatcacaaggaaaatcaaaaccttgccataagaaattattactttgttgatcagtattgttgttggctttgattacaaagtttccattgtct |
1103828 |
T |
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| Q |
101 |
aatagttgagcaacatgagaacttgtagttgacaaagattgtgttgtgatgtttgttgaccaaacaagagtttgattgttgtcggtaagtatttcaaggt |
200 |
Q |
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| T |
1103827 |
aatagttgagcaacatgagaacttgtagttgacaaagattgtgttgtgatgtttgttgaccaaacaagtgtttgattgttgttggtaagtatttcaaggt |
1103728 |
T |
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| Q |
201 |
ttcctttattgcttatgatcaacatggttgagttg |
235 |
Q |
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| T |
1103727 |
ttccatcattgctcatgatcaacatggttgagttg |
1103693 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 1 - 235
Target Start/End: Complemental strand, 1071710 - 1071476
Alignment:
| Q |
1 |
caacaaagtatcacaaggaaaatcaaaaccttgccataagaaattattactttgttgatcagtattgttgttggctttgattacaaagtttccattgtct |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1071710 |
caacaaagtatcacaaggaaaatcaaaaccttgccataagaaattattactttgttgatcagtattgttgttggctttgattacaaagtttccattgtct |
1071611 |
T |
|
| Q |
101 |
aatagttgagcaacatgagaacttgtagttgacaaagattgtgttgtgatgtttgttgaccaaacaagagtttgattgttgtcggtaagtatttcaaggt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||| |||||||| |
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| T |
1071610 |
aatagttgagcaacatgagaacttgtagttgacaaagattgtgttgtgatgtttgttgaccaaacaagtgtttgattgttgttggtaagtagttcaaggt |
1071511 |
T |
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| Q |
201 |
ttcctttattgcttatgatcaacatggttgagttg |
235 |
Q |
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|||| | ||||| ||||||||||||||||||||| |
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| T |
1071510 |
ttccctctttgctcatgatcaacatggttgagttg |
1071476 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 1 - 235
Target Start/End: Complemental strand, 1046897 - 1046663
Alignment:
| Q |
1 |
caacaaagtatcacaaggaaaatcaaaaccttgccataagaaattattactttgttgatcagtattgttgttggctttgattacaaagtttccattgtct |
100 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1046897 |
caacaaagtatcacaaggaaaatcaaaaccttgccataagaaattattactttgttgatcagtattgttgttggctttgattacaaagtttccattgtct |
1046798 |
T |
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| Q |
101 |
aatagttgagcaacatgagaacttgtagttgacaaagattgtgttgtgatgtttgttgaccaaacaagagtttgattgttgtcggtaagtatttcaaggt |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||| ||||| ||||||| || ||||| | | |||| |
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| T |
1046797 |
aatagttgagcaacatgagaacttgtagttgacaaagatcgggttgtgatgtttgttgaccaaacaagtgtttggttgttgttggaaagtagtactaggt |
1046698 |
T |
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| Q |
201 |
ttcctttattgcttatgatcaacatggttgagttg |
235 |
Q |
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|||||| ||||||||||||||||||||||||||| |
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| T |
1046697 |
ttccttcgttgcttatgatcaacatggttgagttg |
1046663 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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