View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8628_low_2 (Length: 440)
Name: NF8628_low_2
Description: NF8628
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8628_low_2 |
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Alignment Details
Target: chr1 (Bit Score: 162; Significance: 3e-86; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 162; E-Value: 3e-86
Query Start/End: Original strand, 262 - 427
Target Start/End: Complemental strand, 19734962 - 19734797
Alignment:
| Q |
262 |
taaaggagtaatatcttagtcattcatggtgcaatacttttgcaataaaactcagttgacaatatccctcaattactctaaaattattttatcattatgt |
361 |
Q |
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| T |
19734962 |
taaaggagtaatatcttagtcattcatggtgcaatacttttgcaataaaactcagttgataatatccctcaattactctaaaattattttatcattatgt |
19734863 |
T |
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| Q |
362 |
gtcatttatttgtaataacttgtaattagtctacacgctcctagcttgtacttgtactgtgcatct |
427 |
Q |
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| T |
19734862 |
gtcatttatttgtaataacttgtaattagtctacacgctcctagcttgtacttgtactgtgcatct |
19734797 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 154; E-Value: 2e-81
Query Start/End: Original strand, 262 - 427
Target Start/End: Complemental strand, 19730578 - 19730413
Alignment:
| Q |
262 |
taaaggagtaatatcttagtcattcatggtgcaatacttttgcaataaaactcagttgacaatatccctcaattactctaaaattattttatcattatgt |
361 |
Q |
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|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
19730578 |
taaaggagtaatatcttagtcattcatgctgcaatacttttgcaataaaactcagttgacaatatcccttaattactctaaaattattttatcattatgt |
19730479 |
T |
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| Q |
362 |
gtcatttatttgtaataacttgtaattagtctacacgctcctagcttgtacttgtactgtgcatct |
427 |
Q |
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| T |
19730478 |
gtcatttatttgtaataacttgtaattagtctacacgctcctagcttgtacttgtattgtgcatct |
19730413 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 262 - 306
Target Start/End: Complemental strand, 5845387 - 5845343
Alignment:
| Q |
262 |
taaaggagtaatatcttagtcattcatggtgcaatacttttgcaa |
306 |
Q |
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| T |
5845387 |
taaaggagtaatatttttgtcattaatggtgcaatatttttgcaa |
5845343 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 55; Significance: 2e-22; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 323 - 418
Target Start/End: Complemental strand, 19855059 - 19854962
Alignment:
| Q |
323 |
atatccctcaattactctaaaattattttatcattatgtgt--catttatttgtaataacttgtaattagtctacacgctcctagcttgtacttgtac |
418 |
Q |
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| T |
19855059 |
atatcactcaattactctaaaattatcctatcattatgtgtatcatttgtttgtaataacttgtaattagtttacatgctcctagcttttccttgtac |
19854962 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 46; Significance: 4e-17; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 63 - 112
Target Start/End: Complemental strand, 33857676 - 33857627
Alignment:
| Q |
63 |
gtacatgttggaaattttgtagaataaaatccatttgactacgctacttt |
112 |
Q |
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| T |
33857676 |
gtacatgttggaatttttgtagaataaaatccatttgactacgctacttt |
33857627 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 262 - 305
Target Start/End: Complemental strand, 40915412 - 40915369
Alignment:
| Q |
262 |
taaaggagtaatatcttagtcattcatggtgcaatacttttgca |
305 |
Q |
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| T |
40915412 |
taaaggagtaatatcttagtcattgatggtgcaatacttttgca |
40915369 |
T |
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