View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8628_low_3 (Length: 378)
Name: NF8628_low_3
Description: NF8628
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8628_low_3 |
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Alignment Details
Target: chr2 (Bit Score: 323; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 323; E-Value: 0
Query Start/End: Original strand, 1 - 360
Target Start/End: Original strand, 1529724 - 1530082
Alignment:
| Q |
1 |
aggaggagtaggatatgattaaaaataagttaaacttatcatttccggttagtacatcaaacggttagtacaccaaacagcggattgagtcaggatataa |
100 |
Q |
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| T |
1529724 |
aggaggagtaggatatgattaaaaataagttaaacttatcatttccggttagtacatcaaacggttagtacaccaaacagcggattgagtcaggatataa |
1529823 |
T |
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| Q |
101 |
tccaatcatatcctgtcccgttatcatgcgcaccaaacatgccgttaaggtttaatatattctcccattgtgaagcggtacagtaacatatgggaatgta |
200 |
Q |
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| T |
1529824 |
tctaatcatatcctgtcccgttatcatgcgcaccaaacatgctgttaaggtttaatatattctcccattgtgaagcggtacagtaacatatgggaatgta |
1529923 |
T |
|
| Q |
201 |
ccaacatctcgaaacttttgagtgagatttttgccataaattatgattccaatttccatccacttcaatagatcaatctctaccgtagtgcgccgaaaat |
300 |
Q |
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| T |
1529924 |
ccaacatctcgaaacttttgagtgagatttttgccataaattatgattccaatttccatccacttcaatagatcaatctctaccgtagtgcgccgaaaat |
1530023 |
T |
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| Q |
301 |
accaatttacacnnnnnnnntaatagcaatccgattataatactttggaagcccacttac |
360 |
Q |
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| T |
1530024 |
accaatttacac-aaaaaaataatagcaatccgattataatactttggaagcccacttac |
1530082 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 71 - 138
Target Start/End: Complemental strand, 22573150 - 22573080
Alignment:
| Q |
71 |
caccaaacagcggattgagtcaggata---taatccaatcatatcctgtcccgttatcatgcgcaccaaac |
138 |
Q |
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| T |
22573150 |
caccaaacaacggattgagtcaggataggatattctaatcatatcatgtctccttatcatgcgcaccaaac |
22573080 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 10026506 - 10026462
Alignment:
| Q |
1 |
aggaggagtaggatatgattaaaaataagttaaacttatcatttc |
45 |
Q |
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| T |
10026506 |
aggaggagtgggatatgattagaaataggttaaacttatcatttc |
10026462 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 6 - 62
Target Start/End: Complemental strand, 26183718 - 26183662
Alignment:
| Q |
6 |
gagtaggatatgattaaaaataagttaaacttatcatttccggttagtacatcaaac |
62 |
Q |
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| T |
26183718 |
gagtaggataggattagaaatatgttaaacttatcatttcctgttggtgcatcaaac |
26183662 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 3 - 45
Target Start/End: Complemental strand, 22202993 - 22202951
Alignment:
| Q |
3 |
gaggagtaggatatgattaaaaataagttaaacttatcatttc |
45 |
Q |
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|||| |||||||| ||||||||||| ||||||||||||||||| |
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| T |
22202993 |
gaggggtaggataggattaaaaataggttaaacttatcatttc |
22202951 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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