View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8628_low_4 (Length: 347)
Name: NF8628_low_4
Description: NF8628
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8628_low_4 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 128; Significance: 4e-66; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 128; E-Value: 4e-66
Query Start/End: Original strand, 19 - 157
Target Start/End: Original strand, 7333665 - 7333804
Alignment:
| Q |
19 |
ggttctacttggtaatgcatcagtttctcttgattgaacattgtagtagtgggagaattgaacaaattaagcaaaagggtcggtgaaaaaacttgt-tta |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
7333665 |
ggttctacttggtaatgcatcagtttctcttgattgaacattgtagtagtgggagaattgaacaaattaagcaaaagggtcggtgaaaaaacttgtgttt |
7333764 |
T |
|
| Q |
118 |
tttggctttgttgtttgtgagattttggtgatgaaaaatg |
157 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7333765 |
tttggctttgttgtttgtgagattttggtgatgaaaaatg |
7333804 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 197 - 329
Target Start/End: Complemental strand, 7299832 - 7299700
Alignment:
| Q |
197 |
tgtgagagagaaactttgaaagagtgtgtggaagaatgttgtggaccatagggtacttggtttgtctgttattgtcggaggagcgtgttctgtttcttaa |
296 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
7299832 |
tgtgagagagaaactttcaaagagtgtgtggaagaatgttggggaccatagggtacttggtttgtctgttattgtcggaggagcgtgttctgtttcgtaa |
7299733 |
T |
|
| Q |
297 |
gtgttgtttgtctcatgtctctatatactctct |
329 |
Q |
| |
|
|||||||||||||||||||||||||| |||||| |
|
|
| T |
7299732 |
gtgttgtttgtctcatgtctctatatcctctct |
7299700 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 114; E-Value: 9e-58
Query Start/End: Original strand, 197 - 329
Target Start/End: Original strand, 7333844 - 7333977
Alignment:
| Q |
197 |
tgtgagagagaaactttgaaagagtgtgtggaagaatgttgtggaccatagggtacttggtttgtctgttattgtcggaggagcgtgttctgtttcttaa |
296 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
7333844 |
tgtgagagagaaactttgaaagagtgtgtggaagaatgttgtggaccatagggtacttggtttgtctgttattgtcggagaagcgtgttctgtttcttaa |
7333943 |
T |
|
| Q |
297 |
g-tgttgtttgtctcatgtctctatatactctct |
329 |
Q |
| |
|
| | ||||||||||||||||||||||| |||||| |
|
|
| T |
7333944 |
gttattgtttgtctcatgtctctatatgctctct |
7333977 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 19 - 157
Target Start/End: Complemental strand, 7300010 - 7299872
Alignment:
| Q |
19 |
ggttctacttggtaatgcatcagtttctcttgattgaacattgtagtagtgggagaattgaacaaattaagcaaaagggtcggtgaaaaaacttgt-tta |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||| |||||||||| || |
|
|
| T |
7300010 |
ggttctacttggtaatgcatcagtttctcttgattgaacattgtagtagtggaagaattgaacaaattaagcaaaagggtaggtg-aaaaacttgtgttt |
7299912 |
T |
|
| Q |
118 |
tttggctttgttgtttgtgagattttggtgatgaaaaatg |
157 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7299911 |
tttggctttgttgtttgtgagattttggtgatgaaaaatg |
7299872 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 220 - 288
Target Start/End: Original strand, 7340629 - 7340697
Alignment:
| Q |
220 |
gtgtgtggaagaatgttgtggaccatagggtacttggtttgtctgttattgtcggaggagcgtgttctg |
288 |
Q |
| |
|
|||||||||| ||||||| | |||||||| || |||||| ||||||||||||| ||||||| ||||||| |
|
|
| T |
7340629 |
gtgtgtggaataatgttgggaaccataggatatttggttcgtctgttattgtcagaggagcatgttctg |
7340697 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University