View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8628_low_5 (Length: 340)
Name: NF8628_low_5
Description: NF8628
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8628_low_5 |
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Alignment Details
Target: chr8 (Bit Score: 307; Significance: 1e-173; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 307; E-Value: 1e-173
Query Start/End: Original strand, 18 - 332
Target Start/End: Original strand, 1777337 - 1777651
Alignment:
| Q |
18 |
ctcttgaagtaaacttgtgaaattcaggttttcactaatcacgaatgcagtgacaaaaactgcaagagaaactttcttagggaacttttccatagcaaca |
117 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
1777337 |
ctcttgaagtaaacttgtgaaattcaggttttcactaatcacgaatgcagtgacaaaaactgcaagagaaattttcttagggaacttttccatagcaaca |
1777436 |
T |
|
| Q |
118 |
gataagggtatccctccaaaactatgacccacaagaatcaccttttcctttggaggaagagattctataaatgaaatcaaaggttcataatattttgaaa |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
1777437 |
gataagggtatccctccaaaactatgacccacaagaatcaccttttcctttggaggaagagattctataaatgaaatcaaaggttcatgatattttgaaa |
1777536 |
T |
|
| Q |
218 |
ttgatgaatgaatctcttgaacctgtattggactgataccacaagcagccaattcaattgtggtaacattatgaccagctgatttcaacatggttgcaac |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1777537 |
ttgatgaatgaatctcttgaacctgtattggactgataccacaagcagccaattcaattgtggtaacattatgaccagctgatttcaacatggttgcaac |
1777636 |
T |
|
| Q |
318 |
cttataccaacacca |
332 |
Q |
| |
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||||||||||||||| |
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| T |
1777637 |
cttataccaacacca |
1777651 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 28 - 332
Target Start/End: Original strand, 1801394 - 1801695
Alignment:
| Q |
28 |
aaacttgtgaaattcaggttttcactaatcacgaatgcagtgacaaaaactgcaagagaaactttcttagggaacttttccatagcaacagataagggta |
127 |
Q |
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|||||||||||||| || |||||||||| ||| |||||||||| ||||||||||| ||||| |||||||||||| ||||||||||||||||||||||||| |
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| T |
1801394 |
aaacttgtgaaattaagattttcactaagcaccaatgcagtgataaaaactgcaacagaaattttcttagggaatttttccatagcaacagataagggta |
1801493 |
T |
|
| Q |
128 |
tccctccaaaactatgacccacaagaatcaccttttcctttggaggaagagattctataaatgaaatcaaaggttcataatattttgaaattgatgaatg |
227 |
Q |
| |
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|||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||| || |||||||||||||||| |||||| |||||| |
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| T |
1801494 |
tccctccaaaactatgacccacaagaatcaccttctcctttggaggaagagattccataaatgtcatgaaaggttcataatattgtgaaat---tgaatg |
1801590 |
T |
|
| Q |
228 |
aatctcttgaacctgtattggactgataccacaagcagccaattcaattgtggtaacattatgaccagctgatttcaacatggttgcaaccttataccaa |
327 |
Q |
| |
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||||||||||||||| |||||||||||||||||||||||||| ||||| || |||||||||||||||||| |||| | ||| |||||||||||||||||| |
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| T |
1801591 |
aatctcttgaacctggattggactgataccacaagcagccaagtcaatagttgtaacattatgaccagctaatttaagcatagttgcaaccttataccaa |
1801690 |
T |
|
| Q |
328 |
cacca |
332 |
Q |
| |
|
||||| |
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|
| T |
1801691 |
cacca |
1801695 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 18 - 332
Target Start/End: Original strand, 1784574 - 1784885
Alignment:
| Q |
18 |
ctcttgaagtaaacttgtgaaattcaggttttcactaatcacgaatgcagtgacaaaaactgcaagagaaactttcttagggaacttttccatagcaaca |
117 |
Q |
| |
|
|||||||| || |||||||||||| ||| ||||||| || || | |||||||||||||||||||| ||||||||||||| ||||||||||||||||||| |
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| T |
1784574 |
ctcttgaattacacttgtgaaattaagggtttcactcataaccagtgcagtgacaaaaactgcaaccgaaactttcttagagaacttttccatagcaaca |
1784673 |
T |
|
| Q |
118 |
gataagggtatccctccaaaactatgacccacaagaatcaccttttcctttggaggaagagattctataaatgaaatcaaaggttcataatattttgaaa |
217 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||| ||||||| ||||| ||||||||||||||||||| |
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| T |
1784674 |
gataagggtatccctccataactatgacccacaagaatcaccttctcctttggaggaagagattccataaatgtcatcaatggttcataatattttgaaa |
1784773 |
T |
|
| Q |
218 |
ttgatgaatgaatctcttgaacctgtattggactgataccacaagcagccaattcaattgtggtaacattatgaccagctgatttcaacatggttgcaac |
317 |
Q |
| |
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| |||||||||||||||||| ||||||||| ||||||| ||||||||| ||||| || ||||||||||||||||||||||| | ||| |||||||| |
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| T |
1784774 |
t---tgaatgaatctcttgaacttgtattggattgatacctgaagcagccatgtcaatagttgtaacattatgaccagctgatttaagcatagttgcaac |
1784870 |
T |
|
| Q |
318 |
cttataccaacacca |
332 |
Q |
| |
|
||||||||||||||| |
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| T |
1784871 |
cttataccaacacca |
1784885 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 43 - 332
Target Start/End: Original strand, 1772399 - 1772685
Alignment:
| Q |
43 |
aggttttcactaatcacgaatgcagtgacaaaaactgcaagagaaactttcttagggaacttttccatagcaacagataagggtatccctccaaaactat |
142 |
Q |
| |
|
||||||| ||||| ||| | ||||| ||||||||||||| || | ||| | |||||||||||||||||||||||| | | ||| || | ||||| |
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|
| T |
1772399 |
aggttttgactaagcacataagcagtaacaaaaactgcaactgagattttttgtgggaacttttccatagcaacagatgtagacaccccacccagactat |
1772498 |
T |
|
| Q |
143 |
gacccacaagaatcaccttttcctttggaggaagagattctataaatgaaatcaaaggttcataatattttgaaattgatgaatgaatctcttgaacctg |
242 |
Q |
| |
|
|||| |||||||| ||||| || ||||||||||||||||| ||||||| ||||| ||||||||||||||||||||||| |||||||||||| || || |
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| T |
1772499 |
gaccaacaagaattaccttctcatttggaggaagagattccataaatgtcatcaagggttcataatattttgaaattga---atgaatctcttggacttg |
1772595 |
T |
|
| Q |
243 |
tattggactgataccacaagcagccaattcaattgtggtaacattatgaccagctgatttcaacatggttgcaaccttataccaacacca |
332 |
Q |
| |
|
||||||| ||||||| |||||||||||||||| || ||||||||||||||||||||||| | ||| ||| | ||||||||||||||||| |
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| T |
1772596 |
tattggattgatacctgaagcagccaattcaatagttgtaacattatgaccagctgatttaagcatagttaccaccttataccaacacca |
1772685 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 130 - 164
Target Start/End: Original strand, 33760498 - 33760532
Alignment:
| Q |
130 |
cctccaaaactatgacccacaagaatcaccttttc |
164 |
Q |
| |
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||||||| ||||||||||||||||||||||||||| |
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| T |
33760498 |
cctccaagactatgacccacaagaatcaccttttc |
33760532 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 197; Significance: 1e-107; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 46 - 332
Target Start/End: Complemental strand, 25727846 - 25727563
Alignment:
| Q |
46 |
ttttcactaatcacgaatgcagtgacaaaaactgcaagagaaactttcttagggaacttttccatagcaacagataagggtatccctccaaaactatgac |
145 |
Q |
| |
|
|||||||||| ||| |||||||||| ||||||||||| ||||| ||| |||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25727846 |
ttttcactaagcaccaatgcagtgataaaaactgcaacagaaattttgttagggaatttttccatagcaacagataagggtatccctccaaaactatgac |
25727747 |
T |
|
| Q |
146 |
ccacaagaatcaccttttcctttggaggaagagattctataaatgaaatcaaaggttcataatattttgaaattgatgaatgaatctcttgaacctgtat |
245 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||| ||||||| || |||||||||||||||| |||||| |||||||||||||||||||||||| |
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| T |
25727746 |
ccacaagaatcaccttctcctttggaggaagagattccataaatgtcataaaaggttcataatattgtgaaat---tgaatgaatctcttgaacctgtat |
25727650 |
T |
|
| Q |
246 |
tggactgataccacaagcagccaattcaattgtggtaacattatgaccagctgatttcaacatggttgcaaccttataccaacacca |
332 |
Q |
| |
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|||||||||||||||| ||||||||||||| || ||||||||||||||||||||||||| ||| |||||||||||||||||| |||| |
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|
| T |
25727649 |
tggactgataccacaaccagccaattcaatagttgtaacattatgaccagctgatttcagcatagttgcaaccttataccaagacca |
25727563 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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