View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8628_low_6 (Length: 322)
Name: NF8628_low_6
Description: NF8628
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8628_low_6 |
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Alignment Details
Target: chr2 (Bit Score: 247; Significance: 1e-137; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 1 - 305
Target Start/End: Original strand, 742686 - 742988
Alignment:
| Q |
1 |
tcagcaagagctttagcaagttcttctgttttaccaacaccagttggactaaggaataggaaggaaccaattggatgttgaggtcttcctaaaccagctc |
100 |
Q |
| |
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|||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
742686 |
tcagcaagagctttagcaagttct---gttttaccaacaccagttggaccaaggaataggaaggaaccaattggatgttgaggtcttcctgaaccagctc |
742782 |
T |
|
| Q |
101 |
tccaccttaattaatacagcgttagcaacgtcatttactgcttgatcttgtcccacaactctattgtgcaacctgtcaccaattccaagaaacctttctt |
200 |
Q |
| |
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|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
742783 |
tccaccttaa----tacagcgttagcaacgtcatttactgcttgatcttgtcccacaactctattatgcaacctgtcaccaattccaagaaacctttctt |
742878 |
T |
|
| Q |
201 |
tctcattttcgccaatttgggtcactggtatgccggtcaataggctaacaaccatagcaattaggttttgtactc-----cagcagtttctgtcaacatt |
295 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
742879 |
tctcattttcgccaatttgggtcactggtatgccggtcaataggctaacaaccatagcaattaggttttgtactccagcacagcagtttctgtcaacatt |
742978 |
T |
|
| Q |
296 |
aagctctcat |
305 |
Q |
| |
|
|||||||||| |
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|
| T |
742979 |
aagctctcat |
742988 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 147; E-Value: 2e-77
Query Start/End: Original strand, 1 - 254
Target Start/End: Original strand, 42449942 - 42450188
Alignment:
| Q |
1 |
tcagcaagagctttagcaagttcttctgttttaccaacaccagttggactaaggaataggaaggaaccaattggatgttgaggtcttcctaaaccagctc |
100 |
Q |
| |
|
||||||||||| |||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||| |
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|
| T |
42449942 |
tcagcaagagccttagcaagttct---gttttaccaacaccagttggaccaaggaataggaaggaaccaattggatgttgaggtcttcctaaaccaactc |
42450038 |
T |
|
| Q |
101 |
tccaccttaattaatacagcgttagcaacgtcatttactgcttgatcttgtcccacaactctattgtgcaacctgtcaccaattccaagaaacctttctt |
200 |
Q |
| |
|
||| || | ||||||| |||||||||| |||||||||| |||||||||||||| ||||| ||||| ||||||||||||| ||||||||||||||||| |
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| T |
42450039 |
tccgcc----tcaatacagtgttagcaacggcatttactgcatgatcttgtcccactactcttttgtgtaacctgtcaccaagtccaagaaacctttctt |
42450134 |
T |
|
| Q |
201 |
tctcattttcgccaatttgggtcactggtatgccggtcaataggctaacaacca |
254 |
Q |
| |
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|||||||||| | || | ||| ||||||||| || ||||||||||||||||||| |
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|
| T |
42450135 |
tctcattttcactaagtcgggacactggtatacccgtcaataggctaacaacca |
42450188 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 81; Significance: 4e-38; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 3 - 262
Target Start/End: Complemental strand, 10046090 - 10045838
Alignment:
| Q |
3 |
agcaagagctttagcaagttcttctgttttaccaacaccagttggactaaggaataggaaggaaccaattggatgttgaggtcttcctaaaccagctctc |
102 |
Q |
| |
|
||||||||| |||||||||||| |||||||| ||||||||||||| ||||||||||||||||||| |||| ||||| |||||||||| |||||||||| |
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|
| T |
10046090 |
agcaagagccttagcaagttct---gttttaccgacaccagttggaccaaggaataggaaggaaccagttggttgttgtggtcttcctagaccagctctc |
10045994 |
T |
|
| Q |
103 |
caccttaattaatacagcgttagcaacgtcatttactgcttgatcttgtcccacaactctattgtgcaacctgtcaccaattccaagaaacctttctttc |
202 |
Q |
| |
|
||| ||| |||||| ||| || | || |||||||| |||||||||||||||||| | ||||| ||||| |||| ||||| ||||||||||| |
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| T |
10045993 |
gacc----ttactacagccccagcgacagctttaactgcttggtcttgtcccacaactctagtatgcaatctgtctccaagtccaaccaacctttcttta |
10045898 |
T |
|
| Q |
203 |
tcattttcgccaatttgggtcactggtatgccggtcaataggctaacaaccatagcaatt |
262 |
Q |
| |
|
||||||| ||| | | ||||||||||| |||||| || ||||||||||| ||||||| |
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|
| T |
10045897 |
tcattttggcctaaacgagtcactggtataccggtccatcggctaacaacctcagcaatt |
10045838 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 3 - 209
Target Start/End: Complemental strand, 38707882 - 38707683
Alignment:
| Q |
3 |
agcaagagctttagcaagttcttctgttttaccaacaccagttggactaaggaataggaaggaaccaattggatgttgaggtcttcctaaaccagctctc |
102 |
Q |
| |
|
||||||||| |||||||||||| ||||||||||||| | |||||| |||||||||||||| |||| |||| | ||||||||||| ||||||| ||||| |
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|
| T |
38707882 |
agcaagagccttagcaagttct---gttttaccaacactatttggaccaaggaataggaagggaccagttggtttttgaggtcttcttaaaccaactctc |
38707786 |
T |
|
| Q |
103 |
caccttaattaatacagcgttagcaacgtcatttactgcttgatcttgtcccacaactctattgtgcaacctgtcaccaattccaagaaacctttctttc |
202 |
Q |
| |
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| | | | |||||| ||||| | || |||||||| |||||||||||||||||| ||||||| ||||||||| ||||| ||||||||||| |
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| T |
38707785 |
gatc----tcactacagccccagcaaaaactttaactgcttggtcttgtcccacaactctactgtgcaatttgtcaccaagtccaaccaacctttcttta |
38707690 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 65; Significance: 1e-28; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 28 - 209
Target Start/End: Complemental strand, 45467921 - 45467744
Alignment:
| Q |
28 |
gttttaccaacaccagttggactaaggaataggaaggaaccaattggatgttgaggtcttcctaaaccagctctccaccttaattaatacagcgttagca |
127 |
Q |
| |
|
||||||||||||||||| |||| |||||||| |||||||||| |||| ||||| |||||||||||||||||||| | | | |||||||| | |||| |
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|
| T |
45467921 |
gttttaccaacaccagtcggaccaaggaataagaaggaaccagttggttgttggggtcttcctaaaccagctcttgatc----tcaatacagcctcagca |
45467826 |
T |
|
| Q |
128 |
acgtcatttactgcttgatcttgtcccacaactctattgtgcaacctgtcaccaattccaagaaacctttctttctcatttt |
209 |
Q |
| |
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|| |||| || ||||| ||||||||||| |||||| |||||| |||||||||| ||||| |||||| |||||||||||| |
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|
| T |
45467825 |
acagcattaaccgcttggtcttgtcccacgactctagtgtgcagtctgtcaccaagtccaaccaaccttgctttctcatttt |
45467744 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 42; Significance: 0.000000000000008; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 28 - 101
Target Start/End: Original strand, 43064740 - 43064813
Alignment:
| Q |
28 |
gttttaccaacaccagttggactaaggaataggaaggaaccaattggatgttgaggtcttcctaaaccagctct |
101 |
Q |
| |
|
||||||||||||||| |||||| |||||||||||||| || |||| ||||||| |||||||||||||||||| |
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|
| T |
43064740 |
gttttaccaacaccaattggaccaaggaataggaagggacatgttggttgttgagctcttcctaaaccagctct |
43064813 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 28 - 101
Target Start/End: Complemental strand, 43065107 - 43065032
Alignment:
| Q |
28 |
gttttaccaacaccagttggactaaggaataggaagga--accaattggatgttgaggtcttcctaaaccagctct |
101 |
Q |
| |
|
|||||||||||||||||||||| |||||| | |||||| ||| |||||||||||| |||||||||||||||||| |
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|
| T |
43065107 |
gttttaccaacaccagttggacaaaggaacatgaaggaacaccttttggatgttgagctcttcctaaaccagctct |
43065032 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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