View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8628_low_7 (Length: 320)
Name: NF8628_low_7
Description: NF8628
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8628_low_7 |
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| [»] chr3 (4 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 236; Significance: 1e-130; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 77 - 320
Target Start/End: Original strand, 52722657 - 52722900
Alignment:
| Q |
77 |
ctcagcttaatgtataatcgaaattacataactaaagtgtgatgttaattaatttaatcttggctatgagaataagattggagcaaattaattttgcagg |
176 |
Q |
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| T |
52722657 |
ctcagcttaatgtataatcgaaattgcataactaaagtgtgatgttaattaatttaatcttggctatgagaataagattggagcaaattaattttgcagg |
52722756 |
T |
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| Q |
177 |
ttttttgacaaagcagcagttataacagaaaaagacacagttagcaacagatggagtgtatgcacagtgacacaagtcaaagaattcaaatcattcgtta |
276 |
Q |
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| T |
52722757 |
ttttttgacaaagcagcagttataacagaaaaagacacagttagcaacagatggagtgtatgcacagtgacacaagtcgaagaattcaaatcattcgtta |
52722856 |
T |
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| Q |
277 |
aaatccttccagtatcggcctctaccattgctcttgctatttct |
320 |
Q |
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| T |
52722857 |
aaatccttccagtatcggcctctaccattgctcttgctatttct |
52722900 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 177; E-Value: 2e-95
Query Start/End: Original strand, 18 - 320
Target Start/End: Original strand, 52713578 - 52713878
Alignment:
| Q |
18 |
aattgttgtggttagatggtctaattttcatatttgttgactttgtttagtctgataaactcagcttaatgtataatcgaaattacataactaaagtgtg |
117 |
Q |
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| T |
52713578 |
aattgttgtggttagatgatctagttttcatatttgttgacttt--ttagtgttataaactaagcttattttatgatcgaaatcacataactaa-gcgtg |
52713674 |
T |
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| Q |
118 |
atgttaattaatttaatcttggc-tatgagaataagattggagcaaattaattttgcaggttttttgacaaagcagcagttataacagaaaaagacacag |
216 |
Q |
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| T |
52713675 |
atgttgattaatttaatcttggtatatgagaataagatcggagcaaattaattttgcagattttttgacaaagcagcagttattacagaaaaggacacac |
52713774 |
T |
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| Q |
217 |
ttagcaacagatggagtgtatgcacagtgacacaagtcaaagaattcaaatcattcgttaaaatccttccagtatcggcctctaccattgctcttgctat |
316 |
Q |
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| T |
52713775 |
tcagcaacagatggagtgtatgcacagtgacacaagtggaagagttcaaatcattcattaaaatccttccagtgtgggcatctaccattgctcttgctat |
52713874 |
T |
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| Q |
317 |
ttct |
320 |
Q |
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| T |
52713875 |
ttct |
52713878 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 141; E-Value: 6e-74
Query Start/End: Original strand, 148 - 308
Target Start/End: Original strand, 52699432 - 52699592
Alignment:
| Q |
148 |
ataagattggagcaaattaattttgcaggttttttgacaaagcagcagttataacagaaaaagacacagttagcaacagatggagtgtatgcacagtgac |
247 |
Q |
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| T |
52699432 |
ataagattggagcaaattaattttgcaggttttttgacaaagcagcagttataacagaaaaagacacagttagcaacagatggagtgtatgcacagtgac |
52699531 |
T |
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| Q |
248 |
acaagtcaaagaattcaaatcattcgttaaaatccttccagtatcggcctctaccattgct |
308 |
Q |
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| T |
52699532 |
acaagtcgaagaattcaaatcattcattaaaatccttccagtgtgggcatctaccattgct |
52699592 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 18 - 84
Target Start/End: Original strand, 52722265 - 52722331
Alignment:
| Q |
18 |
aattgttgtggttagatggtctaattttcatatttgttgactttgtttagtctgataaactcagctt |
84 |
Q |
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| T |
52722265 |
aattgttgtgcttagatggtctaattttcatatttgttgactttgtttagtctgataaactcagctt |
52722331 |
T |
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