View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8628_low_9 (Length: 291)
Name: NF8628_low_9
Description: NF8628
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8628_low_9 |
 | |
|
| [»] scaffold1825 (1 HSPs) |
| | |
|
Alignment Details
Target: chr7 (Bit Score: 239; Significance: 1e-132; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 25 - 283
Target Start/End: Complemental strand, 44968376 - 44968118
Alignment:
| Q |
25 |
gttgcaaacgcgcgtcttgcttttcccatgatgtttggtaatctaaaacgtgagtttgcaaaacgcagttataattacaaaacgcgagttggaccgaagc |
124 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
44968376 |
gttgcaaacacgcgtcttgcttttcccatgatgtttggcaatctaaaacgtgagtttgcaaaacgcagttataatgacaaaacgcgagttggaccgaagc |
44968277 |
T |
|
| Q |
125 |
tagaaatccaagcttctgcggcaaagcaaaagcgattaagaacttcaacttttcagtgacttgtatagttaccaagttacccataaaatcttcttcaatt |
224 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
44968276 |
tagaaatccaagcttctgcggcaaagcaaaagcgattaagaacttcaactgttcagtgacttgtatagttaccaagttacccataagatcttcttcaatt |
44968177 |
T |
|
| Q |
225 |
ccttacccataaacaactttcttcttcattaaaatcacttctccgatatagttcttctc |
283 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44968176 |
ccttacccataaacaactttcttcttcattaaaatcacttctccgatatagttcttctc |
44968118 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 133 - 210
Target Start/End: Original strand, 37634398 - 37634475
Alignment:
| Q |
133 |
caagcttctgcggcaaagcaaaagcgattaagaacttcaacttttcagtgacttgtatagttaccaagttacccataa |
210 |
Q |
| |
|
|||||||||||| ||||||||| || | | | |||||||||||||||||| |||||| ||||||| |||||||||| |
|
|
| T |
37634398 |
caagcttctgcgtcaaagcaaacgccagttgtagcttcaacttttcagtgacatgtatatttaccaaattacccataa |
37634475 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 66; Significance: 3e-29; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 52 - 265
Target Start/End: Complemental strand, 25158753 - 25158540
Alignment:
| Q |
52 |
atgatgtttggtaatctaaaacgtgagtttgcaaaacgcagttataattacaaaacgcgagttggaccgaagctagaaatccaagcttctgcggcaaagc |
151 |
Q |
| |
|
|||||||||| ||||| |||||||| | || ||||| | |||| | | ||||||||| |||||| |||||||||||||||||||| ||||||||||| |
|
|
| T |
25158753 |
atgatgtttgacaatctgaaacgtgaatctgtaaaacacggttaaagtgacaaaacgccagttgggtagaagctagaaatccaagcttttgcggcaaagc |
25158654 |
T |
|
| Q |
152 |
aaaagcgattaagaacttcaacttttcagtgacttgtatagttaccaagttacccataaaatcttcttcaattccttacccataaacaactttcttcttc |
251 |
Q |
| |
|
||| | |||| | |||||| || ||||||||||||| |||||| ||| ||||||| |||||| |||||| ||| |||||||||||||||||||| |
|
|
| T |
25158653 |
aaacacaattataattctcaactatttagtgacttgtataactaccaaattaaccataaattcttctccaattctctacacataaacaactttcttcttc |
25158554 |
T |
|
| Q |
252 |
attaaaatcacttc |
265 |
Q |
| |
|
|||| |||||||| |
|
|
| T |
25158553 |
attagcatcacttc |
25158540 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 133 - 255
Target Start/End: Complemental strand, 23560093 - 23559971
Alignment:
| Q |
133 |
caagcttctgcggcaaagcaaaagcgattaagaacttcaacttttcagtgacttgtatagttaccaagttacccataaaatcttcttcaattccttaccc |
232 |
Q |
| |
|
|||||||||||| ||||||||| || | | | |||||||||||||||||| | |||| ||||||| |||||||||| | | | ||||| | ||| | |
|
|
| T |
23560093 |
caagcttctgcgtcaaagcaaacgccagttgtagcttcaacttttcagtgacatctatatttaccaaattacccataagttatacaccaatttcctacac |
23559994 |
T |
|
| Q |
233 |
ataaacaactttcttcttcatta |
255 |
Q |
| |
|
||||||| |||||||||||||| |
|
|
| T |
23559993 |
ataaacatatttcttcttcatta |
23559971 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 55; Significance: 1e-22; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 58 - 212
Target Start/End: Original strand, 14054212 - 14054366
Alignment:
| Q |
58 |
tttggtaatctaaaacgtgagtttgcaaaacgcagttataattacaaaacgcgagttggaccgaagctagaaatccaagcttctgcggcaaagcaaaagc |
157 |
Q |
| |
|
||||| ||||| ||| |||| |||||||||| |||||| | | ||||||||| |||||| |||||||||||||||||||| |||||||||||||| || |
|
|
| T |
14054212 |
tttggcaatctgaaaagtgaatttgcaaaacacagttaaagtgacaaaacgccagttgggtagaagctagaaatccaagcttttgcggcaaagcaaacgc |
14054311 |
T |
|
| Q |
158 |
gattaagaacttcaacttttcagtgacttgtatagttaccaagttacccataaaa |
212 |
Q |
| |
|
| ||| | |||||| || ||||||||||||| ||||||| ||| |||||||| |
|
|
| T |
14054312 |
ggttacaattctcaactgtttagtgacttgtataattaccaaattaaccataaaa |
14054366 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 134 - 211
Target Start/End: Original strand, 16561442 - 16561519
Alignment:
| Q |
134 |
aagcttctgcggcaaagcaaaagcgattaagaacttcaacttttcagtgacttgtatagttaccaagttacccataaa |
211 |
Q |
| |
|
||||||||||| ||||||||| || | | | |||||||||||||||||| |||||| ||||||| ||||||||||| |
|
|
| T |
16561442 |
aagcttctgcgtcaaagcaaacgccagttgtagcttcaacttttcagtgacatgtatatttaccaaattacccataaa |
16561519 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1825 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: scaffold1825
Description:
Target: scaffold1825; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 133 - 210
Target Start/End: Original strand, 190 - 267
Alignment:
| Q |
133 |
caagcttctgcggcaaagcaaaagcgattaagaacttcaacttttcagtgacttgtatagttaccaagttacccataa |
210 |
Q |
| |
|
|||||||||||| ||||||||| || | | | |||||||||||||||||| |||||| ||||||| |||||||||| |
|
|
| T |
190 |
caagcttctgcgtcaaagcaaacgccagttgtagcttcaacttttcagtgacatgtatatttaccaaattacccataa |
267 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 133 - 255
Target Start/End: Original strand, 38340189 - 38340311
Alignment:
| Q |
133 |
caagcttctgcggcaaagcaaaagcgattaagaacttcaacttttcagtgacttgtatagttaccaagttacccataaaatcttcttcaattccttaccc |
232 |
Q |
| |
|
|||||||||||| ||||||||| || | | | |||||||||||||||||| || ||| ||||||| |||||||||| | | || ||||| | ||| | |
|
|
| T |
38340189 |
caagcttctgcgtcaaagcaaacgccagttgtagcttcaacttttcagtgacatgcatatttaccaaattacccataagttatactccaatttcctacac |
38340288 |
T |
|
| Q |
233 |
ataaacaactttcttcttcatta |
255 |
Q |
| |
|
||||| | |||||||||||||| |
|
|
| T |
38340289 |
ataaagatatttcttcttcatta |
38340311 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 167 - 255
Target Start/End: Complemental strand, 30311862 - 30311774
Alignment:
| Q |
167 |
cttcaacttttcagtgacttgtatagttaccaagttacccataaaatcttcttcaattccttacccataaacaactttcttcttcatta |
255 |
Q |
| |
|
|||||||||||||||||| | |||| ||||||| |||||||||| | | | ||||| | ||| |||||||| |||||||||||||| |
|
|
| T |
30311862 |
cttcaacttttcagtgacatctatatttaccaaattacccataagttatacaccaatttcctacacataaacatatttcttcttcatta |
30311774 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University