View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8629_high_12 (Length: 306)
Name: NF8629_high_12
Description: NF8629
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8629_high_12 |
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Alignment Details
Target: chr3 (Bit Score: 168; Significance: 5e-90; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 168; E-Value: 5e-90
Query Start/End: Original strand, 20 - 248
Target Start/End: Original strand, 39290275 - 39290511
Alignment:
| Q |
20 |
aatggcggaggatgaatgcaaataagcacatgaatactaaggcggataaaaaaccaataaacatgatgatcattgttgcttt--------aaggttgtct |
111 |
Q |
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| T |
39290275 |
aatggtggaggatgagtgcaaataagggcatgagtattaagccgaataaaaaaacaataaacatgatgatcattgttgctttaagcctttaaggttgtct |
39290374 |
T |
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| Q |
112 |
tttaataaggttgttgttcctaacggtggatgtgatgttgttggtgattgtgcatcagtgtatgaatggaatagtaggaccattaggaagaacaattgga |
211 |
Q |
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| T |
39290375 |
tttaataaggttgttgttcctaacggtggatgtgatgttgttggtgattgtgcatcagtgtatgaatggaatagtaggaccattaggaagaacaattgga |
39290474 |
T |
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| Q |
212 |
atagtttcatttttcaacaatgattcttagattgatc |
248 |
Q |
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| T |
39290475 |
ataatttcatttttcaacaatgattcttagattgatc |
39290511 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 168; E-Value: 5e-90
Query Start/End: Original strand, 20 - 248
Target Start/End: Original strand, 39297312 - 39297548
Alignment:
| Q |
20 |
aatggcggaggatgaatgcaaataagcacatgaatactaaggcggataaaaaaccaataaacatgatgatcattgttgcttt--------aaggttgtct |
111 |
Q |
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| T |
39297312 |
aatggtggaggatgagtgcaaataagggcatgagtattaagccgaataaaaaaacaataaacatgatgatcattgttgctttaagcctttaaggttgtct |
39297411 |
T |
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| Q |
112 |
tttaataaggttgttgttcctaacggtggatgtgatgttgttggtgattgtgcatcagtgtatgaatggaatagtaggaccattaggaagaacaattgga |
211 |
Q |
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| T |
39297412 |
tttaataaggttgttgttcctaacggtggatgtgatgttgttggtgattgtgcatcagtgtatgaatggaatagtaggaccattaggaagaacaattgga |
39297511 |
T |
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| Q |
212 |
atagtttcatttttcaacaatgattcttagattgatc |
248 |
Q |
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| T |
39297512 |
ataatttcatttttcaacaatgattcttagattgatc |
39297548 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 248 - 278
Target Start/End: Original strand, 39297565 - 39297595
Alignment:
| Q |
248 |
ctagttggagtagtagaaagcattaacacga |
278 |
Q |
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| T |
39297565 |
ctagttggagtagtagaaagcattaacacga |
39297595 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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