View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8629_high_18 (Length: 226)
Name: NF8629_high_18
Description: NF8629
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8629_high_18 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 197; Significance: 1e-107; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 1 - 197
Target Start/End: Original strand, 39333029 - 39333225
Alignment:
| Q |
1 |
aagacacaaagaaagacaacgttgtaagaaagaaggttgttttgtttgtgtgtttggaacaaattaaataaaattgaatgatgaaaagaaaaagggtggt |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39333029 |
aagacacaaagaaagacaacgttgtaagaaagaaggttgttttgtttgtgtgtttggaacaaattaaataaaattgaatgatgaaaagaaaaagggtggt |
39333128 |
T |
|
| Q |
101 |
tgttaatttgtcatgctggggttggagtgtatttggaaagtgaagtgtgtgtcagatatgatgatgatagtgagtttggtgagatccagaggcagag |
197 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39333129 |
tgttaatttgtcatgctggggttggagtgtatttggaaagtgaagtgtgtgtcagatatgatgatgatagtgagtttggtgagatccagaggcagag |
39333225 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University