View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8629_high_5 (Length: 514)
Name: NF8629_high_5
Description: NF8629
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8629_high_5 |
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Alignment Details
Target: chr1 (Bit Score: 426; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 426; E-Value: 0
Query Start/End: Original strand, 17 - 504
Target Start/End: Original strand, 45123145 - 45123629
Alignment:
| Q |
17 |
atatataagctcgatttctgtatttcaagatgcatcagtcagaaatattttaagtatatatatgaattttatcttttctattatactcttgcggtagagt |
116 |
Q |
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||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
45123145 |
atatataagctcgatttctgtatttcaagatacatcaatcagaaatattttaagtatatatctgaattttatcttttctattatactcttgcggtagagt |
45123244 |
T |
|
| Q |
117 |
gttgtagatatagtttggtattgctttggagattgtgggtgtaccgggatcaatggagtgtttgactagtctatgtgttgtaaaagtttgcatatagtat |
216 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45123245 |
gttgtagatatagtttggtattgctttggagattgtgggtgtatcggggtcaatggagtgtttgactagtctatgtgttgtaaaagtttgcatatagtat |
45123344 |
T |
|
| Q |
217 |
tattttctagttgttattggacaatgatcatagtttcgtctccgctttttgaagtttccacctatgttgtgattgtgtttctttattttctctatgttga |
316 |
Q |
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| T |
45123345 |
tattttctagttgtcattggacaatgatcatagtttcgtctccgctttttgaagtttctacctatgttgtgattgtgtttctttattttctctatgttga |
45123444 |
T |
|
| Q |
317 |
tcttttccaacacaattttgtcttcaactatgaaaaatgtttctcaaatgtatccttctatgaatgtctattacagaatattatgaatattagtgatgat |
416 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
45123445 |
tcttttccaacacaattttgtcttcaactatgaaaaatgtttctcaaatatatccttctatgaatgtctattacaaaatattatgaatattagtgatgat |
45123544 |
T |
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| Q |
417 |
gtattgattaaatgtatttttaacggtcttcatctcagagagaagagtacaatatttaacagtgtaaactaaagatgagaattatcta |
504 |
Q |
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| T |
45123545 |
gtattgattaaatgtatttttaacggtcttcatctcagagagaatagtacaatatttgacagtgtaa---aaagatgacaattatcta |
45123629 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 32; Significance: 0.00000001; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 194 - 241
Target Start/End: Complemental strand, 22190691 - 22190644
Alignment:
| Q |
194 |
ttgtaaaagtttgcatatagtattattttctagttgttattggacaat |
241 |
Q |
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|||||||| |||||||||||| ||||| ||||||||| |||||||||| |
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| T |
22190691 |
ttgtaaaaatttgcatatagtgttattctctagttgtcattggacaat |
22190644 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 17 - 103
Target Start/End: Complemental strand, 35397485 - 35397399
Alignment:
| Q |
17 |
atatataagctcgatttctgtatttcaagatgcatcagtcagaaatattttaagtatatatatgaattttatcttttctattatact |
103 |
Q |
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|||||||| ||| ||||| |||| ||||||||||||||||||| ||||||||| ||||| ||| ||| ||||||| ||||||| |
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| T |
35397485 |
atatataaactctctttctttattataagatgcatcagtcagaaacattttaagtttatatgtgacattttccttttctcttatact |
35397399 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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