View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8629_low_10 (Length: 406)
Name: NF8629_low_10
Description: NF8629
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8629_low_10 |
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Alignment Details
Target: chr4 (Bit Score: 257; Significance: 1e-143; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 257; E-Value: 1e-143
Query Start/End: Original strand, 28 - 387
Target Start/End: Complemental strand, 35922645 - 35922278
Alignment:
| Q |
28 |
tttggagttgatagattgggtaggagagccctttttcttgaaggtggtcttcaaatgctcatttgtcaggtaactatgttgtgtatttttttt---acca |
124 |
Q |
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| T |
35922645 |
tttggagttgatagattgggtaggagagccctttttcttgaaggtggccttcaaatgctcatttgtcaggtaactatgttgtgtatttttttttttacca |
35922546 |
T |
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| Q |
125 |
gaataaaaagatttatgcnnnnnnnnnaat------aatttaacaatgtacannnnnnnnnccaactatatttgttgatgtgcaaagattggagttgctg |
218 |
Q |
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| T |
35922545 |
gaataaaaagagttatgtttttttttttatttttataatttaacaatgtacatttttttt-ccaactatatttgttgatgtgcaaagattggagttgctg |
35922447 |
T |
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| Q |
219 |
catctattggagccaaatttggaattgatggaaaccctggtgagttaccaaagtggtatgcaattgttgtggtgctattcatttgcgcttatgtagcagc |
318 |
Q |
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| T |
35922446 |
catctattggagccaaatttggaattgatggaaaccctggtgagttaccaaagtggtatgcaattgttgtggtgctattcatttgcgcttatgtagcagc |
35922347 |
T |
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| Q |
319 |
attttcttggtcatggggtcctcttggttggttggtgacaagtgagatctttccattggagattcgatc |
387 |
Q |
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| T |
35922346 |
attttcttggtcatggggtcctcttggttggttggtgacaagtgagatctttccattggagattcgatc |
35922278 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 224 - 389
Target Start/End: Original strand, 36202606 - 36202771
Alignment:
| Q |
224 |
attggagccaaatttggaattgatggaaaccctggtgagttaccaaagtggtatgcaattgttgtggtgctattcatttgcgcttatgtagcagcatttt |
323 |
Q |
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| T |
36202606 |
attggggccaaatttggaacaagtggaaaccctggtaatttaccagaatggtatgctatagtagttgtgctcttcatttgcatttacgtagcaggatttg |
36202705 |
T |
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| Q |
324 |
cttggtcatggggtcctcttggttggttggtgacaagtgagatctttccattggagattcgatctg |
389 |
Q |
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| T |
36202706 |
cttggtcatggggtcctcttggttggttggttcctagtgagattttcccattggagattcgttctg |
36202771 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 30 - 101
Target Start/End: Original strand, 36202415 - 36202486
Alignment:
| Q |
30 |
tggagttgatagattgggtaggagagccctttttcttgaaggtggtcttcaaatgctcatttgtcaggtaac |
101 |
Q |
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| T |
36202415 |
tggagttgataagtggggtaggagagcccttttccttgaaggtggtgctcaaatgctcatatgccaggtaac |
36202486 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 266 - 363
Target Start/End: Complemental strand, 18234052 - 18233955
Alignment:
| Q |
266 |
ccaaagtggtatgcaattgttgtggtgctattcatttgcgcttatgtagcagcattttcttggtcatggggtcctcttggttggttggtgacaagtga |
363 |
Q |
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| T |
18234052 |
ccaaagtggtatgcaattgttgttgttatgtgcatttgtgtgtacgtagcaggatttgcatggtcttggggtcctctaggttggttggtgccaagtga |
18233955 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 326 - 387
Target Start/End: Complemental strand, 1239099 - 1239038
Alignment:
| Q |
326 |
tggtcatggggtcctcttggttggttggtgacaagtgagatctttccattggagattcgatc |
387 |
Q |
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| T |
1239099 |
tggtcttggggtcctcttggatggttggtgccaagtgaaatttttccacttgaggttcgatc |
1239038 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 326 - 387
Target Start/End: Original strand, 1356823 - 1356884
Alignment:
| Q |
326 |
tggtcatggggtcctcttggttggttggtgacaagtgagatctttccattggagattcgatc |
387 |
Q |
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| T |
1356823 |
tggtcgtggggtccactaggttggttagtaccaagtgagatttttccattggagattagatc |
1356884 |
T |
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