View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8629_low_11 (Length: 353)
Name: NF8629_low_11
Description: NF8629
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8629_low_11 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 80; Significance: 2e-37; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 255 - 334
Target Start/End: Complemental strand, 44693603 - 44693524
Alignment:
| Q |
255 |
ccctaaaaggcctgccaaacagcgcagggccaaagctcatgacgcagcagcaacaaacacagctgactgctaaacaggag |
334 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44693603 |
ccctaaaaggcctgccaaacagcgcagggccaaagctcatgacgcagcagcaacaaacacagctgactgctaaacaggag |
44693524 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 49; Significance: 6e-19; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 175 - 238
Target Start/End: Complemental strand, 30898135 - 30898071
Alignment:
| Q |
175 |
ctaacttatacttgatggaagacgtaattcaattgtgcatcaaag-atactcaaacaacacgaaa |
238 |
Q |
| |
|
|||| |||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
30898135 |
ctaatttatacttgatggaagacgtaactcaattgtgcatcaaagaatactcaaacaacacgaaa |
30898071 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University