View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8629_low_13 (Length: 333)
Name: NF8629_low_13
Description: NF8629
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8629_low_13 |
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Alignment Details
Target: chr2 (Bit Score: 290; Significance: 1e-163; HSPs: 7)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 290; E-Value: 1e-163
Query Start/End: Original strand, 15 - 316
Target Start/End: Original strand, 16978043 - 16978344
Alignment:
| Q |
15 |
tggacatcaccagtagctgcgactctctaacaacattcccgctgaatctgttcccaaatcttgattttctcgacctttataagtgtggtagttttgaaat |
114 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
16978043 |
tggacatcaccagtagctgcgactctctaacaacattcccgctgaatctgttcccaaatcttgattttctcgacctttataagtgtagtagttttgaaat |
16978142 |
T |
|
| Q |
115 |
gatttcacaggaaaatgagcatcttaaactcacaactctctcaattggagagtgtcctaaatttgaatcatttccaaaaggaggattgtctacaccaagg |
214 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
16978143 |
gatttcacaggaaaatgagcatcttaaactcacatctctctcaattggagagtgtcctaaatttgcatcatttccaaaaggaggattgtctacaccaagg |
16978242 |
T |
|
| Q |
215 |
ctgcaacactttgatatttccaaattggagaatttaaaatcacttcctaaatgcatgcatgtcctccttccatctctttataagctatctatagatgatt |
314 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
16978243 |
ctgcaacactttgatatttccaaattggagaatttaaaatcacttcctaaatgcatgcatgtcctccttccatctctttataagctatctatagatgatt |
16978342 |
T |
|
| Q |
315 |
gt |
316 |
Q |
| |
|
|| |
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|
| T |
16978343 |
gt |
16978344 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 286; E-Value: 1e-160
Query Start/End: Original strand, 15 - 316
Target Start/End: Original strand, 17029915 - 17030216
Alignment:
| Q |
15 |
tggacatcaccagtagctgcgactctctaacaacattcccgctgaatctgttcccaaatcttgattttctcgacctttataagtgtggtagttttgaaat |
114 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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|
| T |
17029915 |
tggacatcaccagtagctgcgactctctaacaacattcccgctgaatctgttcccaaatcttgattttctcgacctttataagtgtagtagttttgaaat |
17030014 |
T |
|
| Q |
115 |
gatttcacaggaaaatgagcatcttaaactcacaactctctcaattggagagtgtcctaaatttgaatcatttccaaaaggaggattgtctacaccaagg |
214 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
17030015 |
gatttcacaggaaaatgagcatcttaaactcacatctctctcaattggagagtgtcctaaatttgcatcatttccaaaaggaggattgtctacaccaagg |
17030114 |
T |
|
| Q |
215 |
ctgcaacactttgatatttccaaattggagaatttaaaatcacttcctaaatgcatgcatgtcctccttccatctctttataagctatctatagatgatt |
314 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
17030115 |
ctgcaacactttgatatttccaaattggagaatttaaaatcacttcctaaatgcatgcatgtcctccttccatctctttataagctatctatagataatt |
17030214 |
T |
|
| Q |
315 |
gt |
316 |
Q |
| |
|
|| |
|
|
| T |
17030215 |
gt |
17030216 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 286; E-Value: 1e-160
Query Start/End: Original strand, 15 - 316
Target Start/End: Original strand, 17048253 - 17048554
Alignment:
| Q |
15 |
tggacatcaccagtagctgcgactctctaacaacattcccgctgaatctgttcccaaatcttgattttctcgacctttataagtgtggtagttttgaaat |
114 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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|
| T |
17048253 |
tggacatcaccagtagctgcgactctctaacaacattcccgctgaatctgttcccaaatcttgattttctcgacctttataagtgtagtagttttgaaat |
17048352 |
T |
|
| Q |
115 |
gatttcacaggaaaatgagcatcttaaactcacaactctctcaattggagagtgtcctaaatttgaatcatttccaaaaggaggattgtctacaccaagg |
214 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
17048353 |
gatttcacaggaaaatgagcatcttaaactcacatctctctcaattggagagtgtcctaaatttgcatcatttccaaaaggaggattgtctacaccaagg |
17048452 |
T |
|
| Q |
215 |
ctgcaacactttgatatttccaaattggagaatttaaaatcacttcctaaatgcatgcatgtcctccttccatctctttataagctatctatagatgatt |
314 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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|
| T |
17048453 |
ctgcaacactttgatatttccaaattggagaatttaaaatcacttcctaaatgcatgcatgtcctccttccatctctttataagctatctatagataatt |
17048552 |
T |
|
| Q |
315 |
gt |
316 |
Q |
| |
|
|| |
|
|
| T |
17048553 |
gt |
17048554 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 131; E-Value: 6e-68
Query Start/End: Original strand, 30 - 316
Target Start/End: Original strand, 17109390 - 17109676
Alignment:
| Q |
30 |
gctgcgactctctaacaacattcccgctgaatctgttcccaaatcttgattttctcgacctttataagtgtggtagttttgaaatgatttcacaggaaaa |
129 |
Q |
| |
|
|||| ||||||||||| || ||||| || || |||||||| |||||||| ||| || ||||||||||| || ||| |||||||||||||||||||| |
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| T |
17109390 |
gctgtgactctctaacgaccttccctctcaaactgttcccgaatcttgacactcttgatgtttataagtgtattaatttcgaaatgatttcacaggaaaa |
17109489 |
T |
|
| Q |
130 |
tgagcatcttaaactcacaactctctcaattggagagtgtcctaaatttgaatcatttccaaaaggaggattgtctacaccaaggctgcaacactttgat |
229 |
Q |
| |
|
||| ||||||||||||||| |||||| ||||| ||||||||||||||||| |||||||||||| |||||||||||| |||| ||||| || || ||| || |
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|
| T |
17109490 |
tgaacatcttaaactcacatctctcttaattgaagagtgtcctaaatttgcatcatttccaaatggaggattgtctgcacccaggcttcagcagttttat |
17109589 |
T |
|
| Q |
230 |
atttccaaattggagaatttaaaatcacttcctaaatgcatgcatgtcctccttccatctctttataagctatctatagatgattgt |
316 |
Q |
| |
|
|||| ||||| ||| | ||||||||||||||| ||||||||||| |||||||||||||||| |||||||| |||||| |||||||| |
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| T |
17109590 |
ctttcaaaattagaggagttaaaatcacttcctgaatgcatgcatatcctccttccatctctctataagctgtctataaatgattgt |
17109676 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 70 - 307
Target Start/End: Original strand, 17024305 - 17024547
Alignment:
| Q |
70 |
aaatcttgattttctcgacctttataagtgtggtagttttgaaatgatttcacaggaaaatgagcatcttaaactcacaactctctcaattggagagtgt |
169 |
Q |
| |
|
||||||||||| ||||| | ||||||||| | || ||||||||||| ||| |||||||||| ||||||| ||| | | |||||||||| | ||||| |
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|
| T |
17024305 |
aaatcttgattatctcggcgtttataagtttaataattttgaaatgaattcctaggaaaatgaacatcttatacttaaatatctctcaattaggaagtgt |
17024404 |
T |
|
| Q |
170 |
cctaaatttgaatcatttccaaaaggaggattgtctacaccaaggctgcaacactttgatatttccaaattggagaatt-----taaaatcacttcctaa |
264 |
Q |
| |
|
||| | |||| | |||| || || | ||||| |||| | ||||| | ||||||||| |||||| ||||| |||||||| |||||||||||||||| |
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|
| T |
17024405 |
ccttattttggaacattacccaaggaaggatcgtctgctccaagtttacaacactttaatattttcaaataggagaattcaatttaaaatcacttcctaa |
17024504 |
T |
|
| Q |
265 |
atgcatgcatgtcctccttccatctctttataagctatctata |
307 |
Q |
| |
|
|||||||||| || || ||||||||||| |||| ||||||||| |
|
|
| T |
17024505 |
atgcatgcatatcttctttccatctcttcataacctatctata |
17024547 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 70 - 307
Target Start/End: Original strand, 17089577 - 17089819
Alignment:
| Q |
70 |
aaatcttgattttctcgacctttataagtgtggtagttttgaaatgatttcacaggaaaatgagcatcttaaactcacaactctctcaattggagagtgt |
169 |
Q |
| |
|
||||||||||| ||||| | ||||||||| | || ||||||||||| ||| |||||||||| ||||||| ||| | | |||||||||| | ||||| |
|
|
| T |
17089577 |
aaatcttgattatctcggcgtttataagtttaataattttgaaatgaattcctaggaaaatgaacatcttatacttaaatatctctcaattaggaagtgt |
17089676 |
T |
|
| Q |
170 |
cctaaatttgaatcatttccaaaaggaggattgtctacaccaaggctgcaacactttgatatttccaaattggagaatt-----taaaatcacttcctaa |
264 |
Q |
| |
|
||| | |||| | |||| || || | ||||| |||| | |||| | ||||||||| |||||| ||||| |||||||| |||||||||||||||| |
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|
| T |
17089677 |
ccttattttggaacattacccaaggaaggatcgtctgctccaaatttacaacactttaatattttcaaataggagaattcaatttaaaatcacttcctaa |
17089776 |
T |
|
| Q |
265 |
atgcatgcatgtcctccttccatctctttataagctatctata |
307 |
Q |
| |
|
|||||||||| || || ||||||||||| |||| ||||||||| |
|
|
| T |
17089777 |
atgcatgcatatcttctttccatctcttcataacctatctata |
17089819 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 75 - 307
Target Start/End: Original strand, 17035072 - 17035309
Alignment:
| Q |
75 |
ttgattttctcgacctttataagtgtggtagttttgaaatgatttcacaggaaaatgagcatcttaaactcacaactctctcaattggagagtgtcctaa |
174 |
Q |
| |
|
|||||| ||||| | ||||||||| | || ||||||||||| ||| |||||||||| ||||||| ||| | | |||||||||| | |||||||| | |
|
|
| T |
17035072 |
ttgattatctcggcgtttataagtttaataattttgaaatgaattcctaggaaaatgaacatcttatacttaaatatctctcaattaggaagtgtcctta |
17035171 |
T |
|
| Q |
175 |
atttgaatcatttccaaaaggaggattgtctacaccaaggctgcaacactttgatatttccaaattggagaatt-----taaaatcacttcctaaatgca |
269 |
Q |
| |
|
|||| | |||| || || | ||||| |||| | ||||| | ||||||||| |||||| ||||| |||||||| ||||||||||||||||||||| |
|
|
| T |
17035172 |
ttttggaacattacccaaggaaggatcgtctgctccaagtttacaacactttaatattttcaaataggagaattcaatttaaaatcacttcctaaatgca |
17035271 |
T |
|
| Q |
270 |
tgcatgtcctccttccatctctttataagctatctata |
307 |
Q |
| |
|
||||| || || ||||||||||| |||| ||||||||| |
|
|
| T |
17035272 |
tgcatatcttctttccatctcttcataacctatctata |
17035309 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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