View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8629_low_17 (Length: 259)
Name: NF8629_low_17
Description: NF8629
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8629_low_17 |
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Alignment Details
Target: chr7 (Bit Score: 185; Significance: 1e-100; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 21 - 243
Target Start/End: Complemental strand, 30383712 - 30383489
Alignment:
| Q |
21 |
caatatacgtggcttcagaagcctacaattaatctcataactcagccgctgaaagaagnnnnnnnnn-tgtatttgcaccattgaatctgtatgatatgt |
119 |
Q |
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| T |
30383712 |
caatatatgtggcttcagaagcctacaattaatctcataactcagccgctgaaagaaggaaaaaaaaatgtatttgcaccattgaatctgtatgatatgt |
30383613 |
T |
|
| Q |
120 |
ttaaaacaattaaatttggaacccaaagacaaaagtatgcatgcaatagcagcactcaaaagatctttgaaaagcctaaggataacaatgttaagtcact |
219 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30383612 |
ttaaaacaattaaatttggaacccaaagacaaaagtatgcatgcaatagcagcactcaaaagatctttgaaaagcctaaggataacaatgttaagtcact |
30383513 |
T |
|
| Q |
220 |
ccaagcaactactttgaagtataa |
243 |
Q |
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|||||||||||||||||||||||| |
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| T |
30383512 |
ccaagcaactactttgaagtataa |
30383489 |
T |
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