View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8629_low_20 (Length: 236)

Name: NF8629_low_20
Description: NF8629
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8629_low_20
NF8629_low_20
[»] chr7 (1 HSPs)
chr7 (12-209)||(8424824-8425010)
[»] chr5 (2 HSPs)
chr5 (12-209)||(11888287-11888474)
chr5 (145-198)||(18979756-18979809)
[»] scaffold0141 (1 HSPs)
scaffold0141 (12-209)||(16640-16826)
[»] chr2 (2 HSPs)
chr2 (137-209)||(13698022-13698094)
chr2 (146-197)||(40275034-40275085)
[»] chr4 (4 HSPs)
chr4 (139-215)||(39735709-39735785)
chr4 (145-209)||(1558488-1558552)
chr4 (137-197)||(3959064-3959124)
chr4 (19-74)||(1558617-1558673)
[»] chr1 (3 HSPs)
chr1 (131-195)||(52243006-52243070)
chr1 (12-77)||(13128817-13128883)
chr1 (145-209)||(48769787-48769851)
[»] scaffold0267 (1 HSPs)
scaffold0267 (137-209)||(7548-7620)
[»] chr3 (2 HSPs)
chr3 (137-209)||(3830786-3830858)
chr3 (137-209)||(3792606-3792674)
[»] scaffold0060 (1 HSPs)
scaffold0060 (137-197)||(18813-18873)
[»] chr8 (1 HSPs)
chr8 (145-198)||(26155174-26155227)


Alignment Details
Target: chr7 (Bit Score: 110; Significance: 1e-55; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 110; E-Value: 1e-55
Query Start/End: Original strand, 12 - 209
Target Start/End: Original strand, 8424824 - 8425010
Alignment:
Q  12 ataattctgaagcttgcaggaaaagtgaaaatt-tttaagcaagttctgggctgatgatttggacacggattgaaggggatattagacttctgacagcac 110  Q
    |||||| |||||||||||| |||||||||||   ||||||||||||| ||| |||||||||||||||||||             || |||||||||||||    
T  8424824 ataattttgaagcttgcagaaaaagtgaaaaaaatttaagcaagttccgggatgatgatttggacacggatc------------aggcttctgacagcac 8424911  T
Q  111 tcttgagcctgacataaatgctgagattgaaggggatattgaggatgggagtttatttactccttttatgtcaaaaaggcagaagaagtctaataagaa 209  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  8424912 tcttgagcctgacataaatgctgagatcgaaggggatattgaggatgggagtttatttactccttttatatcaaaaaggcagaagaagtctaataagaa 8425010  T

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Target: chr5 (Bit Score: 108; Significance: 2e-54; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 12 - 209
Target Start/End: Complemental strand, 11888474 - 11888287
Alignment:
Q  12 ataattctgaagcttgcaggaaaagtgaaaattt--ttaagcaagttctgggctgatgatttggacacggattgaaggggatattagacttctgacagca 109  Q
    |||||||||||||||||||||||||||||||     |||||||||||||||||||||||||||||||| |||             || ||| ||| | ||    
T  11888474 ataattctgaagcttgcaggaaaagtgaaaaaaaaattaagcaagttctgggctgatgatttggacacagatc------------aggcttttgaaatca 11888387  T
Q  110 ctcttgagcctgacataaatgctgagattgaaggggatattgaggatgggagtttatttactccttttatgtcaaaaaggcagaagaagtctaataagaa 209  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  11888386 ctcttgagcctgacataaatgctgagattgaaggggatattgaggatgggagtttatttactccttttatgtcgaaaaggcagaagaagtctaataagaa 11888287  T

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Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 145 - 198
Target Start/End: Original strand, 18979756 - 18979809
Alignment:
Q  145 gatattgaggatgggagtttatttactccttttatgtcaaaaaggcagaagaag 198  Q
    ||||||||||| || |||||||| ||| ||||| |||||| |||||||||||||    
T  18979756 gatattgaggagggaagtttattcacttcttttttgtcaagaaggcagaagaag 18979809  T

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Target: scaffold0141 (Bit Score: 102; Significance: 9e-51; HSPs: 1)
Name: scaffold0141
Description:

Target: scaffold0141; HSP #1
Raw Score: 102; E-Value: 9e-51
Query Start/End: Original strand, 12 - 209
Target Start/End: Complemental strand, 16826 - 16640
Alignment:
Q  12 ataattctgaagcttgcaggaaaagtgaaaatt-tttaagcaagttctgggctgatgatttggacacggattgaaggggatattagacttctgacagcac 110  Q
    |||||||||||| ||||||||||||||||||   ||||||||||||  ||||||||||||||||||||||              || ||||||| |||||    
T  16826 ataattctgaaggttgcaggaaaagtgaaaaaaatttaagcaagtttcgggctgatgatttggacacggaac------------aggcttctgaaagcac 16739  T
Q  111 tcttgagcctgacataaatgctgagattgaaggggatattgaggatgggagtttatttactccttttatgtcaaaaaggcagaagaagtctaataagaa 209  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||    
T  16738 tcttgagcctgacataaatgctgagatcgaaggggatattgaggatgggagtttatttactccttttatatcgaaaaggcagaagaagtctaataagaa 16640  T

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Target: chr2 (Bit Score: 65; Significance: 1e-28; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 137 - 209
Target Start/End: Original strand, 13698022 - 13698094
Alignment:
Q  137 ttgaaggggatattgaggatgggagtttatttactccttttatgtcaaaaaggcagaagaagtctaataagaa 209  Q
    ||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  13698022 ttgaaggagatattgaggatgggagtttatttactccttttatgtcaagaaggcagaagaagtctaataagaa 13698094  T

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Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 146 - 197
Target Start/End: Original strand, 40275034 - 40275085
Alignment:
Q  146 atattgaggatgggagtttatttactccttttatgtcaaaaaggcagaagaa 197  Q
    |||||| ||| || |||||||| |||||||||||||||| ||||||||||||    
T  40275034 atattgcggagggaagtttattcactccttttatgtcaagaaggcagaagaa 40275085  T

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Target: chr4 (Bit Score: 61; Significance: 3e-26; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 139 - 215
Target Start/End: Original strand, 39735709 - 39735785
Alignment:
Q  139 gaaggggatattgaggatgggagtttatttactccttttatgtcaaaaaggcagaagaagtctaataagaaacatgc 215  Q
    ||||| ||||||||||| || ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  39735709 gaaggagatattgaggagggaagtttatttactccttttatgtcaagaaggcagaagaagtctaataagaaacatgc 39735785  T

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Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 145 - 209
Target Start/End: Complemental strand, 1558552 - 1558488
Alignment:
Q  145 gatattgaggatgggagtttatttactccttttatgtcaaaaaggcagaagaagtctaataagaa 209  Q
    ||||||||| | || |||||||| |||| ||||||||||| |||||||||||||  |||||||||    
T  1558552 gatattgagaagggaagtttattcactctttttatgtcaagaaggcagaagaagaataataagaa 1558488  T

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Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 137 - 197
Target Start/End: Complemental strand, 3959124 - 3959064
Alignment:
Q  137 ttgaaggggatattgaggatgggagtttatttactccttttatgtcaaaaaggcagaagaa 197  Q
    ||||||| ||||||||||| |  |||||||| |||||||||||||||| || |||||||||    
T  3959124 ttgaaggagatattgaggaggaaagtttattcactccttttatgtcaagaatgcagaagaa 3959064  T

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Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 19 - 74
Target Start/End: Complemental strand, 1558673 - 1558617
Alignment:
Q  19 tgaagcttgcaggaaaagtgaaaat-ttttaagcaagttctgggctgatgatttgga 74  Q
    ||||||||||| ||||||||||||  |||| ||||| ||||||||||||| ||||||    
T  1558673 tgaagcttgcaagaaaagtgaaaaacttttgagcaaattctgggctgatggtttgga 1558617  T

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Target: chr1 (Bit Score: 61; Significance: 3e-26; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 131 - 195
Target Start/End: Complemental strand, 52243070 - 52243006
Alignment:
Q  131 ctgagattgaaggggatattgaggatgggagtttatttactccttttatgtcaaaaaggcagaag 195  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  52243070 ctgagattgaaggggatattgaggatgggagtttatttactccttttatgtcgaaaaggcagaag 52243006  T

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Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 12 - 77
Target Start/End: Original strand, 13128817 - 13128883
Alignment:
Q  12 ataattctgaagcttgcaggaaaagtgaaaat-ttttaagcaagttctgggctgatgatttggacac 77  Q
    |||||||||| ||||||||||||||||| ||| || || | || |||||||||||||||||||||||    
T  13128817 ataattctgaggcttgcaggaaaagtgagaatattctacgtaaattctgggctgatgatttggacac 13128883  T

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Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 145 - 209
Target Start/End: Original strand, 48769787 - 48769851
Alignment:
Q  145 gatattgaggatgggagtttatttactccttttatgtcaaaaaggcagaagaagtctaataagaa 209  Q
    ||||||||||| || ||||||||  ||||||||||||||| || ||||||||||  |||||||||    
T  48769787 gatattgaggagggaagtttattccctccttttatgtcaagaatgcagaagaagaataataagaa 48769851  T

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Target: scaffold0267 (Bit Score: 57; Significance: 6e-24; HSPs: 1)
Name: scaffold0267
Description:

Target: scaffold0267; HSP #1
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 137 - 209
Target Start/End: Complemental strand, 7620 - 7548
Alignment:
Q  137 ttgaaggggatattgaggatgggagtttatttactccttttatgtcaaaaaggcagaagaagtctaataagaa 209  Q
    |||||||  ||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||    
T  7620 ttgaaggatatattgaggatgggagtttatttactccttttatgtcaagaaggcagaagaagcctaataagaa 7548  T

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Target: chr3 (Bit Score: 53; Significance: 1e-21; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 137 - 209
Target Start/End: Complemental strand, 3830858 - 3830786
Alignment:
Q  137 ttgaaggggatattgaggatgggagtttatttactccttttatgtcaaaaaggcagaagaagtctaataagaa 209  Q
    |||||||  |||||||||||| |||||||||||||||||||||||||| ||||||||||||| ||||||||||    
T  3830858 ttgaaggatatattgaggatgagagtttatttactccttttatgtcaagaaggcagaagaagcctaataagaa 3830786  T

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Target: chr3; HSP #2
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 137 - 209
Target Start/End: Complemental strand, 3792674 - 3792606
Alignment:
Q  137 ttgaaggggatattgaggatgggagtttatttactccttttatgtcaaaaaggcagaagaagtctaataagaa 209  Q
    ||||||| ||||||||||||||    |||||||||||||||||||||| ||||||||||||||||||||||||    
T  3792674 ttgaaggagatattgaggatgg----ttatttactccttttatgtcaagaaggcagaagaagtctaataagaa 3792606  T

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Target: scaffold0060 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: scaffold0060
Description:

Target: scaffold0060; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 137 - 197
Target Start/End: Original strand, 18813 - 18873
Alignment:
Q  137 ttgaaggggatattgaggatgggagtttatttactccttttatgtcaaaaaggcagaagaa 197  Q
    ||||||| ||||||||||| || |||||||| |||||||||||||||| ||||||||||||    
T  18813 ttgaaggagatattgaggagggaagtttattcactccttttatgtcaagaaggcagaagaa 18873  T

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Target: chr8 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 145 - 198
Target Start/End: Original strand, 26155174 - 26155227
Alignment:
Q  145 gatattgaggatgggagtttatttactccttttatgtcaaaaaggcagaagaag 198  Q
    ||||||||||| || |||||||| |||||||||||||||| |||||||||||||    
T  26155174 gatattgaggagggaagtttattcactccttttatgtcaagaaggcagaagaag 26155227  T

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