View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8629_low_4 (Length: 530)
Name: NF8629_low_4
Description: NF8629
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8629_low_4 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 508; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 508; E-Value: 0
Query Start/End: Original strand, 1 - 516
Target Start/End: Original strand, 30666480 - 30666995
Alignment:
| Q |
1 |
ccatcttagcaaagacaagctcagcttggaaagattttccctgtccttttcctccccagactccaagaatgagtggaacctataaaaacaaaaatgaaaa |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30666480 |
ccatcttagcaaagacaagctcagcttggaaagattttccctgtccttttcctccccagactccaagaatgagtggaacctataaaaacaaaaatgaaaa |
30666579 |
T |
|
| Q |
101 |
tattgaatatgtatctcaattctgctaaagtcatagcatagtttatagaggaatcatgtgtcaaatttacataccttgatgtttggtagggtcaagaaat |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30666580 |
tattgaatatgtatctcaattctgctaaagtcatagcatagtttatagaggaatcatgtgtcaaatttacataccttgatgtttggtagggtcaagaaat |
30666679 |
T |
|
| Q |
201 |
tcttggtgatgtgaacaacaagcttgtccataaaagcaggagcaatgtaaaatccatccatagtgttgtcaaagttgtacctaaaacaccatcatcacaa |
300 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30666680 |
tcttggtgatgtgaacaacaagcttgtccataaaagcaggagcaatgtaaaatccatccatagtgttgtcaaagttgtacctaaaacaccatcatcacag |
30666779 |
T |
|
| Q |
301 |
gttagatcaaaagaaacttcatttacaaaccatagtaataaaatcatgagcaaattacgagtatttggttttgaattaacaaattgcgtagcaagtcact |
400 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
30666780 |
gttagatcaaaagaaacttcatttacaaaccatagtaataaaatcatgagcaaattacgagtatttggttttgaattaacaaaatgcgtagcaagtcact |
30666879 |
T |
|
| Q |
401 |
cactgtttaagtccagtactaaggtactcataagaactcatgactgcataatgagttccagtatcttgtggtgcttggaaaactgaatcaaccataccct |
500 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30666880 |
cactgtttaagtccagtactaaggtactcataagaactcatgactgcataatgagttccagtatcttgtggtgcttggaaaactgaatcaaccataccct |
30666979 |
T |
|
| Q |
501 |
ttcctcttgtgatgtc |
516 |
Q |
| |
|
|||||||||||||||| |
|
|
| T |
30666980 |
ttcctcttgtgatgtc |
30666995 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 97; Significance: 2e-47; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 396 - 516
Target Start/End: Original strand, 34436947 - 34437067
Alignment:
| Q |
396 |
tcactcactgtttaagtccagtactaaggtactcataagaactcatgactgcataatgagttccagtatcttgtggtgcttggaaaactgaatcaaccat |
495 |
Q |
| |
|
||||| ||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||| |
|
|
| T |
34436947 |
tcacttactgtctaagtccagtactaatgtactcataagaactcatgactgcataatgagttccagaatcttgtggtgcttggaaaactgtatcaaccat |
34437046 |
T |
|
| Q |
496 |
accctttcctcttgtgatgtc |
516 |
Q |
| |
|
|||||| |||||||||||||| |
|
|
| T |
34437047 |
acccttccctcttgtgatgtc |
34437067 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 167 - 295
Target Start/End: Original strand, 34436457 - 34436585
Alignment:
| Q |
167 |
ttacataccttgatgtttggtagggtcaagaaattcttggtgatgtgaacaacaagcttgtccataaaagcaggagcaatgtaaaatccatccatagtgt |
266 |
Q |
| |
|
|||||||||||||| || || || |||||||| ||||| |||||||| |||||||||||||||||||||||||| ||||||||||| |||||||| |||| |
|
|
| T |
34436457 |
ttacataccttgatattaggcagagtcaagaagttcttagtgatgtgtacaacaagcttgtccataaaagcaggtgcaatgtaaaaaccatccatggtgt |
34436556 |
T |
|
| Q |
267 |
tgtcaaagttgtacctaaaacaccatcat |
295 |
Q |
| |
|
|||||| ||||||||| ||| |||||||| |
|
|
| T |
34436557 |
tgtcaaggttgtacctgaaataccatcat |
34436585 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 1 - 81
Target Start/End: Original strand, 34436160 - 34436240
Alignment:
| Q |
1 |
ccatcttagcaaagacaagctcagcttggaaagattttccctgtccttttcctccccagactccaagaatgagtggaacct |
81 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||| || ||||| |||||||||| ||||||||||| ||||||| |
|
|
| T |
34436160 |
ccatcttggcaaagacaagctcagcttggaaagattttccttgacctttacctccccagataccaagaatgagaggaacct |
34436240 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 200 - 246
Target Start/End: Original strand, 6854143 - 6854189
Alignment:
| Q |
200 |
ttcttggtgatgtgaacaacaagcttgtccataaaagcaggagcaat |
246 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||| ||||| ||||| |
|
|
| T |
6854143 |
ttcttagtgatgtgaacaacaagcttgtccataaatgcaggtgcaat |
6854189 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University