View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8629_low_7 (Length: 436)
Name: NF8629_low_7
Description: NF8629
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8629_low_7 |
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Alignment Details
Target: chr4 (Bit Score: 316; Significance: 1e-178; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 316; E-Value: 1e-178
Query Start/End: Original strand, 20 - 425
Target Start/End: Complemental strand, 51903205 - 51902799
Alignment:
| Q |
20 |
aagagcagtaccagataatacagtnnnnnnnnnttatcactcaatctccacctaaatattttaaggaggagccagggatcaaggtgtttcatgtcaaaag |
119 |
Q |
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| T |
51903205 |
aagagcagtaccagataatacagtaaaaaaatattatcactcaatctccacctagatattttaaggaggagccaggaatcaaggtgtttcatgtcaaaag |
51903106 |
T |
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| Q |
120 |
gaaactgacctttatgttccgactggaactctcattttacaagtaagatatgtgcagacacgaatatataaatttgtaatattatatagatggatataac |
219 |
Q |
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|||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
51903105 |
gaaactgaactttatgttccgactggaactgtcattttacaagtaagatatgtgcagacacgaatatataaatttgtaacattatatagatggatataac |
51903006 |
T |
|
| Q |
220 |
atttcatttttgaatgcatagaaaaacatcataactgttttctacaattttttcatattcttgaaacattgaattatgttattctcatt-ttttcaatat |
318 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| || |
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| T |
51903005 |
atttcatttttgaatgcatagaaaaacatcataactgttttctacaattttttcatattcttgaaacattgaattatgttattctcatttttttcaacat |
51902906 |
T |
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| Q |
319 |
caatagatacatatgctgttgatgtcgaaaaaatgtgtcagcaaaacatcatacaagtaattaaataatcatttaatcattcatctcttattcaattttt |
418 |
Q |
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||||||||||||| |||||||||||||||||||||||||| |||||||||||| || ||| ||| ||| |||||||||||||||||||||||||||||| |
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| T |
51902905 |
caatagatacatacgctgttgatgtcgaaaaaatgtgtcaacaaaacatcatataattaaccaaacaattatttaatcattcatctcttattcaattttt |
51902806 |
T |
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| Q |
419 |
catctca |
425 |
Q |
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| T |
51902805 |
catctca |
51902799 |
T |
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