View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8629_low_8 (Length: 432)
Name: NF8629_low_8
Description: NF8629
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8629_low_8 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 298; Significance: 1e-167; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 298; E-Value: 1e-167
Query Start/End: Original strand, 19 - 358
Target Start/End: Complemental strand, 43756229 - 43755891
Alignment:
| Q |
19 |
aaaaggcataacagaaagtattgaagctaaccttaaataagatttataaaccccaaaggcttcaatccctttgcaaattgcaaacggaaaacacgtacca |
118 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43756229 |
aaaaggcataacagaaagtattgaagctaacctcaaataagatttataaacccccacggcttcaatccctttgcaaattgcaaacggaaaacacgtacca |
43756130 |
T |
|
| Q |
119 |
atgcagtgtcggaattgatctactaagttctaattttaatatatagttgtgtactgttgtcttttggtcagcatgtgtatttagagatagagggggaaaa |
218 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
43756129 |
atgcagtgtcggaattgatctactaagttctaattttaatatatagttgtgtactgttgtcttttggtcagcatgtgtatttagagagagagggggaaaa |
43756030 |
T |
|
| Q |
219 |
tatatatataggaataatttcatatggaaaggtttctttcacaaaaaagtgaaaatagtacacttggggtcgtagaatcaaacaatnnnnnnntaagtga |
318 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
43756029 |
tatatatataggaataatttcatatggaaaggtttctttcacaaaaaagtgaaaatagtacacttggggtcgtagaatcaaacaat-aaaaaataagtga |
43755931 |
T |
|
| Q |
319 |
caactatgttgtccatcaacaaaaagtgtgagtgatataa |
358 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43755930 |
caactatgttgtccatcaacaaaaagtgtgagtgatataa |
43755891 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 373 - 426
Target Start/End: Complemental strand, 43755860 - 43755807
Alignment:
| Q |
373 |
taacaataataaacatttctcctaatatgagatatactcaagggaaacaccaaa |
426 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||| |||||||||| |||| |
|
|
| T |
43755860 |
taacaataataaacatttctcctagtatgagatatacttaagggaaacatcaaa |
43755807 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 373 - 426
Target Start/End: Complemental strand, 19356195 - 19356142
Alignment:
| Q |
373 |
taacaataataaacatttctcctaatatgagatatactcaagggaaacaccaaa |
426 |
Q |
| |
|
|||||||||||| |||||||||||| | ||||||||| ||| ||||||||||| |
|
|
| T |
19356195 |
taacaataataagcatttctcctaacacaagatatactaaagagaaacaccaaa |
19356142 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University