View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8630_high_1 (Length: 506)
Name: NF8630_high_1
Description: NF8630
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8630_high_1 |
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Alignment Details
Target: chr5 (Bit Score: 470; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 470; E-Value: 0
Query Start/End: Original strand, 18 - 498
Target Start/End: Complemental strand, 41171374 - 41170896
Alignment:
| Q |
18 |
aaagtaagcctcctaacataatttttagatagctgaactttaatcttaatctaagcatatgattggtttagtttctaaatagctgaacttgcattgccat |
117 |
Q |
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| T |
41171374 |
aaagtaagcctcctaacataatttttagatagctgaactttaatcttaatctaagcatatgattggtttagtttctaaatagctgaacttgcattgccat |
41171275 |
T |
|
| Q |
118 |
gggtcaaacctggtgtgagtgtgaccatgttgcaaagtcgtttggataattttaagtgaatgaatattgctctgtttacttgaagcataatcatagtttt |
217 |
Q |
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| T |
41171274 |
gggtcaaacctggtgtgagtgtgaccatgttgcaaagtcgtttggataattttaagtgaatgaatattgctctgtttacttgaagcataatcatagtttt |
41171175 |
T |
|
| Q |
218 |
tatgatgatcaaaatcaaaattttctatgaagaacattaatacagtcagaaattttccttccttggaacgaaaccttaggagcaaatagcagccaaccta |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41171174 |
tatgatgatcaaaatcaaaattttctatgaagaacattaatacagtcagaaattttccttccttggaacgaaaccttaggagcaaatagcagccaaccta |
41171075 |
T |
|
| Q |
318 |
aagggacgaaaatcttgcaaagcatcatatatcctggcttttcagggattaacaccaacatgttggaattgatgttattcagcagcttaacatacgtaga |
417 |
Q |
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|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41171074 |
aagggacgaaaatcttgcaaagcatc--atatcctggcttttcagggattaacaccaacatgttggaattgatgttattcagcagcttaacatacgtaga |
41170977 |
T |
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| Q |
418 |
aataatatcccaaaaagttaccactaaaaccatcggacctggagcactatcaaaaagttatgcacaaagcatagtattatc |
498 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41170976 |
aataatatcccaaaaagttaccactaaaaccatcggacctggagcactatcaaaaagttatgcacaaagcatagtattatc |
41170896 |
T |
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