View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8630_high_6 (Length: 239)
Name: NF8630_high_6
Description: NF8630
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8630_high_6 |
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Alignment Details
Target: chr5 (Bit Score: 215; Significance: 1e-118; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 1 - 223
Target Start/End: Original strand, 19203426 - 19203647
Alignment:
| Q |
1 |
aaagaaaattcagaacaactaacctcatctgagtccataaattctccattctactggtagggttttattctcaggtttttcttctatatcacttatatgt |
100 |
Q |
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| T |
19203426 |
aaagaaaattcagaacaactaacctcatctgagtccataaattctccattctactggtagggttt-attctcaggtttttcttctatatcacttatatgt |
19203524 |
T |
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| Q |
101 |
tttgtcatcatccattagccacttgcatgtgctttatttgaaatagaagaaaccttggaaaggaaacgttgtttgggtttgttatttgtggggccatcat |
200 |
Q |
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| T |
19203525 |
tttgtcatcatccattagccacttgcatgtgctttatttgaaatagaagaaaccttggaaaggaaacgttgtttgggtttgttatttgtggggccatcat |
19203624 |
T |
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| Q |
201 |
atggaggagaacaagcaaggttg |
223 |
Q |
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| T |
19203625 |
atggaggagaacaagcaaggttg |
19203647 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 2 - 99
Target Start/End: Original strand, 19199744 - 19199840
Alignment:
| Q |
2 |
aagaaaattcagaacaactaacctcatctgagtccataaa-ttctccattctactggtagggttttattctcaggtttttcttctatatcacttatatg |
99 |
Q |
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||||||||||||| |||||||||||| ||||| |||||| |||||||||||||||| ||||||||||||||||||||| |||| ||||||||||||| |
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| T |
19199744 |
aagaaaattcagagtaactaacctcatttgagttcataaaattctccattctactgggagggttttattctcaggttttccttc--tatcacttatatg |
19199840 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 174 - 221
Target Start/End: Original strand, 19199839 - 19199886
Alignment:
| Q |
174 |
tgggtttgttatttgtggggccatcatatggaggagaacaagcaaggt |
221 |
Q |
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| T |
19199839 |
tgggtttgttatttgtggggccatcatatggaggagaacaagcaaggt |
19199886 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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