View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8630_low_15 (Length: 230)
Name: NF8630_low_15
Description: NF8630
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8630_low_15 |
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Alignment Details
Target: chr8 (Bit Score: 183; Significance: 4e-99; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 183; E-Value: 4e-99
Query Start/End: Original strand, 15 - 212
Target Start/End: Original strand, 36322072 - 36322270
Alignment:
| Q |
15 |
ccgaaactggtttctaattttgtcatttcaaa-cacttaacggaaaatttagaaattaatttcatattttttcgtcgctaattcaactttatgtagtagc |
113 |
Q |
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| T |
36322072 |
ccgaaactggtttctaattttggcatttcaaaacacttaacggaaaatttagaaattaatttcatattttttcatcgctaattcaactttatgtagtagc |
36322171 |
T |
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| Q |
114 |
tttaattttttacatgctacttaatcattaatattatgtatgtccatacatgcaggaagaagagctagttgatggaaaagttgattggaaaggaagaag |
212 |
Q |
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| T |
36322172 |
tttaattttttacatgctacttaatcattaatattatgtatgtccatacatgcaggaagaagagctagttgatggaaaagttgattggaaaggaagaag |
36322270 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 134 - 212
Target Start/End: Original strand, 36329052 - 36329134
Alignment:
| Q |
134 |
ttaatcattaatattatgtatgtccatacatg----caggaagaagagctagttgatggaaaagttgattggaaaggaagaag |
212 |
Q |
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||||| ||||||||||||||||||||| |||| |||||||||||| |||||||||||||||||||||||| ||||||||| |
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| T |
36329052 |
ttaattattaatattatgtatgtccatgcatgcatgcaggaagaagagttagttgatggaaaagttgattggagaggaagaag |
36329134 |
T |
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