View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8630_low_16 (Length: 226)
Name: NF8630_low_16
Description: NF8630
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8630_low_16 |
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Alignment Details
Target: chr4 (Bit Score: 179; Significance: 9e-97; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 179; E-Value: 9e-97
Query Start/End: Original strand, 19 - 209
Target Start/End: Complemental strand, 39582374 - 39582184
Alignment:
| Q |
19 |
ggcaaatggtgtctatactcaatccttttcgcttcggtctacatctatctagtaggaaggatgtctctagctagtctccatagaaaataaattattatat |
118 |
Q |
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| T |
39582374 |
ggcaaatggtgtctatactcaatccttttcgcttcggtctacatctatctagtaggaaggatatctctagctagtctccatagaaaataaattattatat |
39582275 |
T |
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| Q |
119 |
taagtgcatctataatccgaaccaaccaatcacgttttaacagagatttttcatttttcaggtctctaatggttccagtagttgttaaatc |
209 |
Q |
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| T |
39582274 |
taagtgcatctataatccaaaccaaccaatcacgttttaacagggatttttcatttttcaggtctctaatggttccagtagttgttaaatc |
39582184 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 103 - 159
Target Start/End: Complemental strand, 39581600 - 39581544
Alignment:
| Q |
103 |
aaataaattattatattaagtgcatctataatccgaaccaaccaatcacgttttaac |
159 |
Q |
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| T |
39581600 |
aaataaattattataataagtgcgtcgaaaatccaaaccaaccaatcatgttttaac |
39581544 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 103 - 184
Target Start/End: Complemental strand, 39577042 - 39576961
Alignment:
| Q |
103 |
aaataaattattatattaagtgcatctataatccgaaccaaccaatcacgttttaacagagatttttcatttttcaggtctc |
184 |
Q |
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| T |
39577042 |
aaataaattattataataaatgtatctaaaatcctaactaaccaatcacgtcttaacgtagagctttcctttttcatgtctc |
39576961 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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