View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8630_low_2 (Length: 415)
Name: NF8630_low_2
Description: NF8630
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8630_low_2 |
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Alignment Details
Target: chr2 (Bit Score: 139; Significance: 1e-72; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 139; E-Value: 1e-72
Query Start/End: Original strand, 18 - 204
Target Start/End: Complemental strand, 33293150 - 33292968
Alignment:
| Q |
18 |
ccatgaattctactggtaacgatctccaaaatcaaaaccaannnnnnnnnattacatatcaaatttaaataagagattaattaatttatatggagtgacg |
117 |
Q |
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| T |
33293150 |
ccatgaattctactggtaacgatctccaaaatcaaaaccaatttttttttattacagatcaaatttaaat----gattaattaatttatatggagtgacg |
33293055 |
T |
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| Q |
118 |
gtgcaaaacatttttacatatgtttatgttttcaatcaaatcgtataaaatagatatttgtaaagatattttatgaactaacttgaa |
204 |
Q |
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| T |
33293054 |
gtgcaaaacatttttacatatgtttatgttttcaatcaaatcgtataaaatagatatttgtaaagatattttatgaactaacttgaa |
33292968 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 165 - 199
Target Start/End: Complemental strand, 44495549 - 44495515
Alignment:
| Q |
165 |
aaatagatatttgtaaagatattttatgaactaac |
199 |
Q |
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| T |
44495549 |
aaataaatatttgtaaagatattttatgaactaac |
44495515 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 144 - 198
Target Start/End: Original strand, 26254691 - 26254745
Alignment:
| Q |
144 |
tgttttcaatcaaatcgtataaaatagatatttgtaaagatattttatgaactaa |
198 |
Q |
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| T |
26254691 |
tgttttcaatcaaataatacaaaatagatatttgtaaagatattttataaactaa |
26254745 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 142 - 199
Target Start/End: Complemental strand, 1590472 - 1590415
Alignment:
| Q |
142 |
tatgttttcaatcaaatcgtataaaatagatatttgtaaagatattttatgaactaac |
199 |
Q |
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| T |
1590472 |
tatgtattcaatcaaattatataaaataaatatttttaaagatattttaagaattaac |
1590415 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 151 - 199
Target Start/End: Original strand, 40362349 - 40362397
Alignment:
| Q |
151 |
aatcaaatcgtataaaatagatatttgtaaagatattttatgaactaac |
199 |
Q |
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| T |
40362349 |
aatcaaatcatatcaaatagatatttttaaagatattttacaaactaac |
40362397 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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