View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8630_low_4 (Length: 359)
Name: NF8630_low_4
Description: NF8630
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8630_low_4 |
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Alignment Details
Target: chr5 (Bit Score: 332; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 332; E-Value: 0
Query Start/End: Original strand, 1 - 344
Target Start/End: Original strand, 10506059 - 10506402
Alignment:
| Q |
1 |
gagaatgagactatgtccaattttgattatacataacaataacatagtcaaaacaaaatggaaacaaagaaagaatcatttggtttgagaagtgcaacgt |
100 |
Q |
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| T |
10506059 |
gagaatgagactatgtccaattttgtttatacataacaataacatagtcaaaacaaaatggaaacaaagaaagaatcatttggattgagaagtgcaacgt |
10506158 |
T |
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| Q |
101 |
gaaggaatataactaccattaagaggatgaaatttaagttggcactcaagtttacacccgaatttaaaagaaccaaacggtccaattctccattgagttc |
200 |
Q |
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| T |
10506159 |
gaaggaatataactaccattaagaggatgaaatttaagttgacactcaagtttacacccgaatttaaaagaaccaaacggtccaattctccattgagttc |
10506258 |
T |
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| Q |
201 |
tagcatcacccttcaaatcaaacccaacaatatttctcttccatgtatcatcaacatcctcaatctgatcaggagtcaaaggaatagaagaagattgaac |
300 |
Q |
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| T |
10506259 |
tagcatcacccttcaaatcaaacccaacaatatttctcttccatgtatcatcaacatcctcaatctgatcaggagtcaaaggaatagaagaagattgaac |
10506358 |
T |
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| Q |
301 |
aacataatccaaatacctagaactattcttaggaacatcaaaag |
344 |
Q |
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| T |
10506359 |
aacataatccaaatacctagaactattcttaggaacatcaaaag |
10506402 |
T |
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