View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8630_low_8 (Length: 249)

Name: NF8630_low_8
Description: NF8630
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8630_low_8
NF8630_low_8
[»] chr8 (1 HSPs)
chr8 (11-111)||(19385227-19385327)
[»] chr4 (7 HSPs)
chr4 (13-111)||(3130496-3130594)
chr4 (12-111)||(47540449-47540548)
chr4 (169-233)||(41205878-41205942)
chr4 (11-111)||(5817698-5817799)
chr4 (11-111)||(8655590-8655691)
chr4 (119-166)||(41205810-41205860)
chr4 (75-111)||(23279194-23279230)
[»] chr3 (3 HSPs)
chr3 (11-111)||(32004503-32004603)
chr3 (11-111)||(49732450-49732550)
chr3 (11-111)||(13448002-13448102)
[»] chr6 (2 HSPs)
chr6 (11-111)||(33629621-33629721)
chr6 (11-111)||(1682563-1682663)
[»] chr7 (1 HSPs)
chr7 (11-111)||(9546259-9546360)
[»] chr1 (7 HSPs)
chr1 (11-111)||(4644535-4644636)
chr1 (26-111)||(14366141-14366226)
chr1 (11-111)||(21527683-21527784)
chr1 (11-111)||(52336185-52336285)
chr1 (11-111)||(9528270-9528371)
chr1 (11-111)||(48266235-48266336)
chr1 (13-111)||(47115812-47115911)
[»] chr5 (1 HSPs)
chr5 (11-111)||(10487423-10487524)
[»] scaffold0220 (1 HSPs)
scaffold0220 (26-111)||(22730-22815)
[»] scaffold0029 (1 HSPs)
scaffold0029 (29-111)||(135153-135235)
[»] scaffold0002 (2 HSPs)
scaffold0002 (29-111)||(312980-313062)
scaffold0002 (29-111)||(328434-328516)


Alignment Details
Target: chr8 (Bit Score: 81; Significance: 3e-38; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 11 - 111
Target Start/End: Complemental strand, 19385327 - 19385227
Alignment:
Q  11 catagagactacaataggaaccaagagttacatcaaaacaaccaacccaagagaggtacatcggcctatacccaaacacacaagagggcaagaccaccac 110  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||||| |||| |||||| ||||||||||||||||||||||||||| |||||||||    
T  19385327 catagagactacaataggaaccaagagttacaacaaaacaaccaacccaacagagctacatcagcctatacccaaacacacaagagggcatgaccaccac 19385228  T
Q  111 t 111  Q
    |    
T  19385227 t 19385227  T

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Target: chr4 (Bit Score: 79; Significance: 5e-37; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 13 - 111
Target Start/End: Complemental strand, 3130594 - 3130496
Alignment:
Q  13 tagagactacaataggaaccaagagttacatcaaaacaaccaacccaagagaggtacatcggcctatacccaaacacacaagagggcaagaccaccact 111  Q
    |||||||||||| ||||||||||||||||| ||||||||||||||||| |||| |||||| ||||||||||||||||||||||||||||||||||||||    
T  3130594 tagagactacaacaggaaccaagagttacaacaaaacaaccaacccaacagagctacatcagcctatacccaaacacacaagagggcaagaccaccact 3130496  T

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Target: chr4; HSP #2
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 12 - 111
Target Start/End: Original strand, 47540449 - 47540548
Alignment:
Q  12 atagagactacaataggaaccaagagttacatcaaaacaaccaacccaagagaggtacatcggcctatacccaaacacacaagagggcaagaccaccact 111  Q
    ||||| ||||||| ||||||||||||||||| ||||||||||||||||| |||| |||||| ||||||||||||||||||||||||||| ||||||||||    
T  47540449 atagatactacaacaggaaccaagagttacaacaaaacaaccaacccaacagagttacatcagcctatacccaaacacacaagagggcatgaccaccact 47540548  T

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Target: chr4; HSP #3
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 169 - 233
Target Start/End: Original strand, 41205878 - 41205942
Alignment:
Q  169 aaacaaccactaatcatggatgaagggcatgaggagacgtaacacattggtgatgaggggcatgt 233  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41205878 aaacaaccactaatcatggatgaagggcatgaggagacgtaacacattggtgatgaggggcatgt 41205942  T

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Target: chr4; HSP #4
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 11 - 111
Target Start/End: Complemental strand, 5817799 - 5817698
Alignment:
Q  11 catagagactacaat-aggaaccaagagttacatcaaaacaaccaacccaagagaggtacatcggcctatacccaaacacacaagagggcaagaccacca 109  Q
    ||||||||||||||  ||||||||||| ||| | |||||||| |||||||| |||| |||||| ||||||||||||||||| ||||||||||||||||||    
T  5817799 catagagactacaaacaggaaccaagaattaaaacaaaacaaacaacccaacagagctacatcagcctatacccaaacacataagagggcaagaccacca 5817700  T
Q  110 ct 111  Q
    ||    
T  5817699 ct 5817698  T

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Target: chr4; HSP #5
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 11 - 111
Target Start/End: Complemental strand, 8655691 - 8655590
Alignment:
Q  11 catagagactacaat-aggaaccaagagttacatcaaaacaaccaacccaagagaggtacatcggcctatacccaaacacacaagagggcaagaccacca 109  Q
    ||||||||||||||  ||||||||||||||||| |||||||| |||||||| | |  |||||| |||||||||||||||||  |||||| ||||||||||    
T  8655691 catagagactacaaacaggaaccaagagttacaacaaaacaaacaacccaacataactacatcagcctatacccaaacacatgagagggtaagaccacca 8655592  T
Q  110 ct 111  Q
    ||    
T  8655591 ct 8655590  T

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Target: chr4; HSP #6
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 119 - 166
Target Start/End: Original strand, 41205810 - 41205860
Alignment:
Q  119 tttttacaattgaaggtggacaatggca---agaagcccgctgttgtccct 166  Q
    ||||||||||||||||||||||||||||   ||||||||||||||||||||    
T  41205810 tttttacaattgaaggtggacaatggcaattagaagcccgctgttgtccct 41205860  T

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Target: chr4; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 75 - 111
Target Start/End: Original strand, 23279194 - 23279230
Alignment:
Q  75 cctatacccaaacacacaagagggcaagaccaccact 111  Q
    |||||||||||||| ||||||||||||||||||||||    
T  23279194 cctatacccaaacaaacaagagggcaagaccaccact 23279230  T

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Target: chr3 (Bit Score: 73; Significance: 2e-33; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 11 - 111
Target Start/End: Original strand, 32004503 - 32004603
Alignment:
Q  11 catagagactacaataggaaccaagagttacatcaaaacaaccaacccaagagaggtacatcggcctatacccaaacacacaagagggcaagaccaccac 110  Q
    |||||||||||||| ||||||||||||||||| ||||||||||||||||| |||| |||||| ||||||||||||||| ||||||||||| |||||||||    
T  32004503 catagagactacaacaggaaccaagagttacaacaaaacaaccaacccaacagagctacatcagcctatacccaaacatacaagagggcatgaccaccac 32004602  T
Q  111 t 111  Q
    |    
T  32004603 t 32004603  T

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Target: chr3; HSP #2
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 11 - 111
Target Start/End: Complemental strand, 49732550 - 49732450
Alignment:
Q  11 catagagactacaataggaaccaagagttacatcaaaacaaccaacccaagagaggtacatcggcctatacccaaacacacaagagggcaagaccaccac 110  Q
    |||||||||||||| ||||| ||||||||||| ||||||||||||||||| |||| |||||| ||||||||||||||||||||||||||| |||||||||    
T  49732550 catagagactacaacaggaatcaagagttacaacaaaacaaccaacccaacagagctacatcagcctatacccaaacacacaagagggcatgaccaccac 49732451  T
Q  111 t 111  Q
    |    
T  49732450 t 49732450  T

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Target: chr3; HSP #3
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 11 - 111
Target Start/End: Original strand, 13448002 - 13448102
Alignment:
Q  11 catagagactacaataggaaccaagagttacatcaaaacaaccaacccaagagaggtacatcggcctatacccaaacacacaagagggcaagaccaccac 110  Q
    |||||||||||||  |||||||||||||||||  |||||||||||||||| |||| ||||||  ||||||| |||||||||||||| |||||||||||||    
T  13448002 catagagactacagcaggaaccaagagttacaataaaacaaccaacccaacagagctacatcaacctatactcaaacacacaagagagcaagaccaccac 13448101  T
Q  111 t 111  Q
    |    
T  13448102 t 13448102  T

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Target: chr6 (Bit Score: 69; Significance: 4e-31; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 11 - 111
Target Start/End: Original strand, 33629621 - 33629721
Alignment:
Q  11 catagagactacaataggaaccaagagttacatcaaaacaaccaacccaagagaggtacatcggcctatacccaaacacacaagagggcaagaccaccac 110  Q
    |||||||||||||| | ||||||||||||||| ||||||||||||||||| |||| |||||| |||||||| |||||||||||||||||| |||||||||    
T  33629621 catagagactacaacaagaaccaagagttacaacaaaacaaccaacccaacagagctacatcagcctatactcaaacacacaagagggcatgaccaccac 33629720  T
Q  111 t 111  Q
    |    
T  33629721 t 33629721  T

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Target: chr6; HSP #2
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 11 - 111
Target Start/End: Original strand, 1682563 - 1682663
Alignment:
Q  11 catagagactacaataggaaccaagagttacatcaaaacaaccaacccaagagaggtacatcggcctatacccaaacacacaagagggcaagaccaccac 110  Q
    |||||||||||| | | ||||||||||||||| |||||||||||| |||| |||| |||||  |||||||||||||||||||||||| || |||||||||    
T  1682563 catagagactactacaagaaccaagagttacaacaaaacaaccaatccaacagagctacatgagcctatacccaaacacacaagaggacatgaccaccac 1682662  T
Q  111 t 111  Q
    |    
T  1682663 t 1682663  T

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Target: chr7 (Bit Score: 66; Significance: 3e-29; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 11 - 111
Target Start/End: Original strand, 9546259 - 9546360
Alignment:
Q  11 catagagactacaat-aggaaccaagagttacatcaaaacaaccaacccaagagaggtacatcggcctatacccaaacacacaagagggcaagaccacca 109  Q
    ||||||||||||||  ||||||||||||||||| |||||||| |||||||| |||| |||||| ||||||||||||||||| ||||||||||||||||||    
T  9546259 catagagactacaaacaggaaccaagagttacaacaaaacaaacaacccaacagagctacatcagcctatacccaaacacataagagggcaagaccacca 9546358  T
Q  110 ct 111  Q
    ||    
T  9546359 ct 9546360  T

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Target: chr1 (Bit Score: 66; Significance: 3e-29; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 11 - 111
Target Start/End: Original strand, 4644535 - 4644636
Alignment:
Q  11 catagagactacaataggaaccaagagttacatcaaaa-caaccaacccaagagaggtacatcggcctatacccaaacacacaagagggcaagaccacca 109  Q
    |||||||||||||| | ||||||||||||||| ||||| |||||||||||| |||| |||||| ||||||||||||||||||||||||||| ||||||||    
T  4644535 catagagactacaacaagaaccaagagttacaacaaaaacaaccaacccaacagagctacatcagcctatacccaaacacacaagagggcacgaccacca 4644634  T
Q  110 ct 111  Q
    ||    
T  4644635 ct 4644636  T

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Target: chr1; HSP #2
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 26 - 111
Target Start/End: Complemental strand, 14366226 - 14366141
Alignment:
Q  26 aggaaccaagagttacatcaaaacaaccaacccaagagaggtacatcggcctatacccaaacacacaagagggcaagaccaccact 111  Q
    ||||||||||||||||| ||||||||||||||||| |||| |||||| ||||||||||||||||||||||||||| ||||||||||    
T  14366226 aggaaccaagagttacaacaaaacaaccaacccaacagagctacatcagcctatacccaaacacacaagagggcatgaccaccact 14366141  T

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Target: chr1; HSP #3
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 11 - 111
Target Start/End: Original strand, 21527683 - 21527784
Alignment:
Q  11 catagagactacaat-aggaaccaagagttacatcaaaacaaccaacccaagagaggtacatcggcctatacccaaacacacaagagggcaagaccacca 109  Q
    ||||||||||||||  ||||||||||||||||| |||||||| |||||||| |||| |||||| ||||||||||||||||| ||||||||||||||||||    
T  21527683 catagagactacaaacaggaaccaagagttacaacaaaacaaacaacccaacagagctacatcagcctatacccaaacacataagagggcaagaccacca 21527782  T
Q  110 ct 111  Q
    ||    
T  21527783 ct 21527784  T

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Target: chr1; HSP #4
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 11 - 111
Target Start/End: Original strand, 52336185 - 52336285
Alignment:
Q  11 catagagactacaataggaaccaagagttacatcaaaacaaccaacccaagagaggtacatcggcctatacccaaacacacaagagggcaagaccaccac 110  Q
    |||||||| ||||| |||| ||||||||| || ||||||||||||||||| |||| |||||| ||||||||||||||||||||||||||| |||||||||    
T  52336185 catagagattacaacaggagccaagagttgcaacaaaacaaccaacccaacagagctacatcagcctatacccaaacacacaagagggcatgaccaccac 52336284  T
Q  111 t 111  Q
    |    
T  52336285 t 52336285  T

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Target: chr1; HSP #5
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 11 - 111
Target Start/End: Complemental strand, 9528371 - 9528270
Alignment:
Q  11 catagagactacaat-aggaaccaagagttacatcaaaacaaccaacccaagagaggtacatcggcctatacccaaacacacaagagggcaagaccacca 109  Q
    ||||||||||||||  ||||||||||||||||| |||||||| |||||||| |||| |||||| ||||||||||||||||| |||||| |||||||||||    
T  9528371 catagagactacaaacaggaaccaagagttacaccaaaacaaacaacccaacagagttacatcagcctatacccaaacacataagaggacaagaccacca 9528272  T
Q  110 ct 111  Q
    ||    
T  9528271 ct 9528270  T

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Target: chr1; HSP #6
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 11 - 111
Target Start/End: Complemental strand, 48266336 - 48266235
Alignment:
Q  11 catagagactacaat-aggaaccaagagttacatcaaaacaaccaacccaagagaggtacatcggcctatacccaaacacacaagagggcaagaccacca 109  Q
    ||||||||||||||  ||||||||||||||||| ||||||||||||| ||| |||| ||||||  |||||||||||||||||||||||| | ||||||||    
T  48266336 catagagactacaaacaggaaccaagagttacaacaaaacaaccaacacaacagagctacatcaacctatacccaaacacacaagagggtatgaccacca 48266237  T
Q  110 ct 111  Q
    ||    
T  48266236 ct 48266235  T

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Target: chr1; HSP #7
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 13 - 111
Target Start/End: Original strand, 47115812 - 47115911
Alignment:
Q  13 tagagactacaataggaaccaagagttacatcaaa-acaaccaacccaagagaggtacatcggcctatacccaaacacacaagagggcaagaccaccact 111  Q
    |||||||||||| || |||||||||||||| |||| ||||||||||||| | || |||||  ||||||||||||||||||||||||||| ||||||||||    
T  47115812 tagagactacaacagaaaccaagagttacaacaaatacaaccaacccaacaaagctacattagcctatacccaaacacacaagagggcatgaccaccact 47115911  T

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Target: chr5 (Bit Score: 62; Significance: 7e-27; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 11 - 111
Target Start/End: Complemental strand, 10487524 - 10487423
Alignment:
Q  11 catagagactaca-ataggaaccaagagttacatcaaaacaaccaacccaagagaggtacatcggcctatacccaaacacacaagagggcaagaccacca 109  Q
    ||||||||||||| | | ||||||||||||||| |||||||| |||||||| |||| |||||| ||||||||||||||||| ||||||||||||||||||    
T  10487524 catagagactacacacatgaaccaagagttacaacaaaacaaacaacccaacagagctacatcagcctatacccaaacacataagagggcaagaccacca 10487425  T
Q  110 ct 111  Q
    ||    
T  10487424 ct 10487423  T

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Target: scaffold0220 (Bit Score: 50; Significance: 1e-19; HSPs: 1)
Name: scaffold0220
Description:

Target: scaffold0220; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 26 - 111
Target Start/End: Complemental strand, 22815 - 22730
Alignment:
Q  26 aggaaccaagagttacatcaaaacaaccaacccaagagaggtacatcggcctatacccaaacacacaagagggcaagaccaccact 111  Q
    ||||||||||||||||| |||||||| |||||||| |||  || ||| ||||||||||||| ||| ||||||||||||||||||||    
T  22815 aggaaccaagagttacaacaaaacaaacaacccaacagaactatatcagcctatacccaaatacataagagggcaagaccaccact 22730  T

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Target: scaffold0029 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 1)
Name: scaffold0029
Description:

Target: scaffold0029; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 29 - 111
Target Start/End: Complemental strand, 135235 - 135153
Alignment:
Q  29 aaccaagagttacatcaaaacaaccaacccaagagaggtacatcggcctatacccaaacacacaagagggcaagaccaccact 111  Q
    |||||| ||||||| |||||||| |||||||| | |  |||||| |||||||||||||||||  |||||||||||||||||||    
T  135235 aaccaaaagttacaacaaaacaaacaacccaacataattacatcagcctatacccaaacacatgagagggcaagaccaccact 135153  T

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Target: scaffold0002 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 2)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 29 - 111
Target Start/End: Complemental strand, 313062 - 312980
Alignment:
Q  29 aaccaagagttacatcaaaacaaccaacccaagagaggtacatcggcctatacccaaacacacaagagggcaagaccaccact 111  Q
    |||||| ||||||| |||||||| |||||||| | |  |||||| |||||||||||||||||  |||||||||||||||||||    
T  313062 aaccaaaagttacaacaaaacaaacaacccaacataattacatcagcctatacccaaacacatgagagggcaagaccaccact 312980  T

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Target: scaffold0002; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 29 - 111
Target Start/End: Complemental strand, 328516 - 328434
Alignment:
Q  29 aaccaagagttacatcaaaacaaccaacccaagagaggtacatcggcctatacccaaacacacaagagggcaagaccaccact 111  Q
    |||||| ||||||| |||||||| |||||||| | |  |||||| |||||||||||||||||  |||||||||||||||||||    
T  328516 aaccaaaagttacaacaaaacaaacaacccaacataattacatcagcctatacccaaacacatgagagggcaagaccaccact 328434  T

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