View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8631_high_14 (Length: 254)
Name: NF8631_high_14
Description: NF8631
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8631_high_14 |
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Alignment Details
Target: chr1 (Bit Score: 210; Significance: 1e-115; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 1 - 245
Target Start/End: Original strand, 12539971 - 12540218
Alignment:
| Q |
1 |
gatctgatgctcgattacgatggcttctattccatatccgattttaacttccttttttcttcccttatcaaaaagggttccctcaggactgtttttcaac |
100 |
Q |
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| T |
12539971 |
gatctgatgctcgattacgatggcttctattccatatccgattttaacttccttttttcttcccttatcaaaaagggttgcctcttgactgtttttcaac |
12540070 |
T |
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| Q |
101 |
ttgctcaacgatgggaggaatccctatcacgtaagtgttatgatcgtgtatatccaaacattgatacttggaaaatcctcatcagttgtcactct---aa |
197 |
Q |
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| T |
12540071 |
ttgctcaacgatgggaggaatccctatcccgtaagtgttatgatcgtgtatatccaaacattgatacttggaaaatcctcatcagttgtcactctaaaaa |
12540170 |
T |
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| Q |
198 |
aaaattaggtaacatctcctttgctttctctctattccacagaataat |
245 |
Q |
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| T |
12540171 |
aaaatcaggtaacatctcttttgctttctctctattccacagaataat |
12540218 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 154 - 191
Target Start/End: Complemental strand, 12533427 - 12533390
Alignment:
| Q |
154 |
ccaaacattgatacttggaaaatcctcatcagttgtca |
191 |
Q |
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| T |
12533427 |
ccaaacattgatacttggaaaatcctcaccagttgtca |
12533390 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 158 - 202
Target Start/End: Original strand, 1717536 - 1717580
Alignment:
| Q |
158 |
acattgatacttggaaaatcctcatcagttgtcactctaaaaaat |
202 |
Q |
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| T |
1717536 |
acattgatacttggaaaatcctcatcacttgtcactctagaaaat |
1717580 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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