View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8631_high_3 (Length: 518)
Name: NF8631_high_3
Description: NF8631
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8631_high_3 |
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Alignment Details
Target: chr6 (Bit Score: 134; Significance: 2e-69; HSPs: 5)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 134; E-Value: 2e-69
Query Start/End: Original strand, 1 - 171
Target Start/End: Original strand, 6621966 - 6622136
Alignment:
| Q |
1 |
attagaaccttatcgaagaactattgtcgagttttgtttaggacataaaactatgaaaggtaaaattattttggtttttggatctttcgtgttagnnnnn |
100 |
Q |
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| T |
6621966 |
attagaacctcatcgaagaactattgtcgagttttgtttaggacataaaactatgaaagtcaaaaatattttggtttttggatctttcgtgttaggaaaa |
6622065 |
T |
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| Q |
101 |
nngatcttctaccttatagattgtattttggaagaaagaagttttatccgtttaaaagatttgacttagtc |
171 |
Q |
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| T |
6622066 |
aagatcttctaccttatagattgtattttggaagaaagaagttttatccgtttaaaagatttgacttagtc |
6622136 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 12 - 175
Target Start/End: Original strand, 10705135 - 10705297
Alignment:
| Q |
12 |
atcgaagaactattgtcgagttttgtttaggacataaaactatgaaaggtaaaattattttggtttttggatctttcgtgttagnnnnnnngatcttcta |
111 |
Q |
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| T |
10705135 |
atcgaagaactattgtcaagatt-gtttaggatatgaaactattaaagtcaaaattattttgatttttggctctttcgagttaggaaaaaatatcttctg |
10705233 |
T |
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| Q |
112 |
ccttatagattgtattttggaagaaagaagttttatccgtttaaaagatttgacttagtcttga |
175 |
Q |
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| T |
10705234 |
ccctatagattgtattttggaagaaagaagttttatcggtttaaaagaattgccttagttttga |
10705297 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 17 - 175
Target Start/End: Complemental strand, 6393472 - 6393316
Alignment:
| Q |
17 |
agaactattgtcgagttttgtttaggacataaaactatgaaaggtaaaattattttggtttttggatctttcgtgttagnnnnnnngatcttctacctta |
116 |
Q |
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| T |
6393472 |
agaactattgtcgagttttgtttaggatatgaaactatgatagtcaaaattattttagtttttggctcttttgagttaggaaaaaagatatgaaac--ta |
6393375 |
T |
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| Q |
117 |
tagattgtattttggaagaaagaagttttatccgtttaaaagatttgacttagtcttga |
175 |
Q |
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| T |
6393374 |
tagattgtattttggaaggaagaagttttatccgtttaaaagaattgccttagtattga |
6393316 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 11 - 174
Target Start/End: Complemental strand, 14819053 - 14818890
Alignment:
| Q |
11 |
tatcgaagaactattgtcgagttttgtttaggacataaaactatgaaaggtaaaattattttggtttttggatctttcgtgttagnnnnnnngatcttct |
110 |
Q |
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| T |
14819053 |
tatcaaagaactgttgtcgagttttgtttgggatatgaaactatcaaagtcggaattattttggtttttggctcttttgtgttaggaaaaaagatctttt |
14818954 |
T |
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| Q |
111 |
accttatagattgtattttggaagaaagaagttttatccgtttaaaagatttgacttagtcttg |
174 |
Q |
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| T |
14818953 |
accttatagactgtgtttcgctagaaagatgttttatctgtttaaaagaattaccttagtcttg |
14818890 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 311 - 361
Target Start/End: Complemental strand, 6392922 - 6392872
Alignment:
| Q |
311 |
gtttcaattggaaatagtttcttgttcaccattggtgacaccctgttagcc |
361 |
Q |
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| T |
6392922 |
gtttcaattccaaatagtttcttgttcaccatcggtgacaccctgttagcc |
6392872 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 60; Significance: 2e-25; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 12 - 159
Target Start/End: Original strand, 15093075 - 15093223
Alignment:
| Q |
12 |
atcgaagaactattgtcgagttttgtttaggacataaaac----tatgaaaggtaaaattattttggtttttggatctttcgtgttagnnnnnnngatct |
107 |
Q |
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| T |
15093075 |
atcgaagaactattgtcgagttttgtttaggatatgaaactatatatgaaagttaaaattattttggttttttgctctttcgagttaggaaaaaagatct |
15093174 |
T |
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| Q |
108 |
tctaccttatagattgtattttggaagaaagaagttttatccgtttaaaaga |
159 |
Q |
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| T |
15093175 |
t---cgttatagactgtatttcggaagaaagaagttttatctgtttaaaaga |
15093223 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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