View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8631_high_4 (Length: 482)
Name: NF8631_high_4
Description: NF8631
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8631_high_4 |
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Alignment Details
Target: chr7 (Bit Score: 172; Significance: 3e-92; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 172; E-Value: 3e-92
Query Start/End: Original strand, 299 - 470
Target Start/End: Complemental strand, 43802982 - 43802811
Alignment:
| Q |
299 |
caccattctctactctcaatgaaccctcgctattccaaacctcttattccttctcaattttctcaacaaattaccaatcgtattaatcgcgaacgctaga |
398 |
Q |
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| T |
43802982 |
caccattctctactctcaatgaaccctcgctattccaaacctcttattccttctcaattttctcaacaaattaccaatcgtattaatcgcgaacgctaga |
43802883 |
T |
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| Q |
399 |
accttcaaatcgtgaattaatggcggtttccgaacaagaatgctcttccgccaagtcaagtccatcttcttc |
470 |
Q |
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| T |
43802882 |
accttcaaatcgtgaattaatggcggtttccgaacaagaatgctcttccgccaagtcaagtccatcttcttc |
43802811 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 129; Significance: 1e-66; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 129; E-Value: 1e-66
Query Start/End: Original strand, 18 - 271
Target Start/End: Original strand, 20524952 - 20525204
Alignment:
| Q |
18 |
ttaataacctgataggatttctcaaacccatccatcatacacaagtctttccttcccacatattcaatctgttaactccaccaaactgacttctgttttc |
117 |
Q |
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|||| ||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
20524952 |
ttaacaacttgataggatttctcaaacccatccatcgtacacaagtctttccttcccacatattcaatctgttaactccaccaaactgacttctgttttc |
20525051 |
T |
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| Q |
118 |
aacnnnnnnnnaaacgattcctccnnnnnnnnnnnncnnnnnnnaattgatgaatgaatgatacaattaatcgatgatacaattacaacacaaagttttc |
217 |
Q |
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||| ||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
20525052 |
aacttttttgtaaacgattcctccaaaaaaaaaaaactttttttaattgatgaatgaatgatacaattaatcgatgatacaattacaacacaaagttttc |
20525151 |
T |
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| Q |
218 |
atcnnnnnnnnaatcattaatcgatggctaaaacccaattggatgtattggtta |
271 |
Q |
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||| |||||||||||||||||||||||||||||||||| |||||||| |
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| T |
20525152 |
atcttttttttaatcattaatcgatggctaaaacccaattggatg-attggtta |
20525204 |
T |
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