View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8631_high_5 (Length: 432)
Name: NF8631_high_5
Description: NF8631
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8631_high_5 |
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Alignment Details
Target: chr1 (Bit Score: 88; Significance: 4e-42; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 88; E-Value: 4e-42
Query Start/End: Original strand, 53 - 412
Target Start/End: Original strand, 26629462 - 26629821
Alignment:
| Q |
53 |
aatgttttcatctttcccagaccatgccttgagagtactctgctgaagtgctcttccaaaagagaaagaaagtgtccatggcttctttcccttcaacttg |
152 |
Q |
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| T |
26629462 |
aatgttttcatcttttccaccccatgccttaagagtactttgctgaagtgcccttccataagagaatgtaagagtccaaggcttctttcccttaagtttg |
26629561 |
T |
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| Q |
153 |
ttcatggcattgaggttgagtgttgcctcctcctcgctctgtccaccagacaagaacacaacagcaggaactgcagccggaacagttcgctgcaaggcct |
252 |
Q |
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| T |
26629562 |
ttcattgcattaaggttaacagatgcttcctcttcactttgtccaccagacaagaaaactatagcaggaaccgcggcaggaacggttctcaacaatgctc |
26629661 |
T |
|
| Q |
253 |
taacggtatattcagctataacttcaggggcaactttttgagaatctaaaccgggggttaccatgttaggcttcaaaagagttccttcgagcagaacatg |
352 |
Q |
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| T |
26629662 |
ggacggtgtgttgggctataacctcaggagcaactttaggagaatctgatcctggtgtaaccatattaggcttcaaaagagtaccttcaagaagaacatg |
26629761 |
T |
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| Q |
353 |
atgatcacttaaagctttgtagcacgcagccagaacacgttcagtcacctcagcacactt |
412 |
Q |
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| T |
26629762 |
atggtcacttagagccttgtaacatgctgcaagaacgcgttctgttacatcagcgcactt |
26629821 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 81; Significance: 6e-38; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 81; E-Value: 6e-38
Query Start/End: Original strand, 57 - 340
Target Start/End: Original strand, 29237048 - 29237331
Alignment:
| Q |
57 |
ttttcatctttcccagaccatgccttgagagtactctgctgaagtgctcttccaaaagagaaagaaagtgtccatggcttctttcccttcaactt-gttc |
155 |
Q |
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| T |
29237048 |
ttttcttcttttccagaccatgcctttagggtactctgttgaagtgcccttccaaaagagaaggaaagggtccatggcttcttaccatt-aacttggtta |
29237146 |
T |
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| Q |
156 |
atggcattgaggttgagtgttgcctcctcctcgctctgtccaccagacaagaacacaacagcaggaactgcagccggaacagttcgctgcaaggccttaa |
255 |
Q |
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| T |
29237147 |
atggcgttgaggttgacgctggcctcttcctcactctgtccaccagacaagaaaacaacagctgggactgcagcaggtacggttctctgcaaagctctaa |
29237246 |
T |
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| Q |
256 |
cggtatattcagctataacttcaggggcaactttttgagaatctaaaccgggggttaccatgttaggcttcaaaagagttccttc |
340 |
Q |
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| T |
29237247 |
cggtgtgctcagcaacaacctcgggtgcaacctttggtgcatcagatccaggggtaaccatgttaggcttcaagagagtgccttc |
29237331 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 57 - 340
Target Start/End: Original strand, 29233298 - 29233581
Alignment:
| Q |
57 |
ttttcatctttcccagaccatgccttgagagtactctgctgaagtgctcttccaaaagagaaagaaagtgtccatggcttctttcccttcaacttgttca |
156 |
Q |
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| T |
29233298 |
ttttcttcttttccagaccatgccttaagggtactctgttgaagtgccattccaaaagagaaagaaagagtccatggcttcttaccattgacttggttaa |
29233397 |
T |
|
| Q |
157 |
tggcattgaggttgagtgttgcctcctcctcgctctgtccaccagacaagaacacaacagcaggaactgcagccggaacagttcgctgcaaggccttaac |
256 |
Q |
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| T |
29233398 |
tggcgttgaggttgacgctggcctcttcctcactctgttcaccagataagaaaacaacagctgggactgcagcaggtacggttctctgcaaagctctaac |
29233497 |
T |
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| Q |
257 |
ggtatattcagctataacttcaggggcaactttttgagaatctaaaccgggggttaccatgttaggcttcaaaagagttccttc |
340 |
Q |
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| T |
29233498 |
ggtgtgctcagcaacaacctcgggtgcaacctttggtgcatcagatccaggggtaaccatgttaggcttcaagagagtgccttc |
29233581 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 69 - 137
Target Start/End: Complemental strand, 42281154 - 42281086
Alignment:
| Q |
69 |
ccagaccatgccttgagagtactctgctgaagtgctcttccaaaagagaaagaaagtgtccatggcttc |
137 |
Q |
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| T |
42281154 |
ccagcccatgtcttgagtgtgctttgctgcagtgctctcccaaatgagaatgaaagtgtccatggcttc |
42281086 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 377 - 415
Target Start/End: Complemental strand, 42028178 - 42028140
Alignment:
| Q |
377 |
cgcagccagaacacgttcagtcacctcagcacacttgtt |
415 |
Q |
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| T |
42028178 |
cgcagccagaacacgttcagtcacctcagcacacttgtt |
42028140 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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