View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8631_low_1 (Length: 601)
Name: NF8631_low_1
Description: NF8631
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8631_low_1 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 498; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 498; E-Value: 0
Query Start/End: Original strand, 7 - 584
Target Start/End: Complemental strand, 55310529 - 55309945
Alignment:
| Q |
7 |
tcgagtgagatgaaaacgatccttggcggccag------aaaccattcatacaattcgtggnnnnnnnctcttctttataagcatacaatttgtggttct |
100 |
Q |
| |
|
||||| ||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
55310529 |
tcgagggagatgaaaacgatccttggcggccagggccagaaaccattcatacaattcgtggttttttcttcttctttataagcatacaatttgtggttct |
55310430 |
T |
|
| Q |
101 |
gtttattccccgtttcattcatatttct-tattttctttcccatccaactttacatttttcccttatttcagctcaagcctatgcttaccatcaaacagg |
199 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
55310429 |
gtttattccccgtttcattcatatttctctattttctttcccatccaactttacattttttccttatttcagctcaagcctatgcttaccatcaaacagg |
55310330 |
T |
|
| Q |
200 |
tataccatccctcttccttatgtttttatatctttgttatatttctcttaatagt-aaaccacttctttctattaattcatttcttggttatttttgaag |
298 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
55310329 |
tatatcatccctcttccttatgtttttatatctttgttatatttctcttaatagttaaaccacttctttctattaattcatttcttggttatttt-gaag |
55310231 |
T |
|
| Q |
299 |
ggagcaatatcatattatatcatggttcaaacatgttaacggtttatgctccaagagctattctaaacttccatctataccaagactcatcttcaacgca |
398 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
55310230 |
ggagcaatatcatattatatcatggttcaaacatgttaacgatttatgctccaagagctattctaaacttccatctataccaagactcatcttcaacgca |
55310131 |
T |
|
| Q |
399 |
acaaacatattattcatacaagatcaataatgttaatttcataaatttccatcctgcttttcctaaactttatggaagtccttgtagtaacatatttctt |
498 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
55310130 |
acaaacatattattcatacaagatcaataatgttaatttcataaatttccatcctgcttttcctaaactttatggaagtccttgtagtaacatatttctt |
55310031 |
T |
|
| Q |
499 |
agttcatccttctcttggaattgtgaaaagcgacacaaatgcctggtaattaagcatgctatgttatctcaattcttcatctactt |
584 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
55310030 |
agttcatccttctcttggaattgtgaaaagcgacacaaatgcctggtaattaagcatgctatgttatctcaattcttcatctactt |
55309945 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University