View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8631_low_10 (Length: 448)
Name: NF8631_low_10
Description: NF8631
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8631_low_10 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 408; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 408; E-Value: 0
Query Start/End: Original strand, 18 - 433
Target Start/End: Complemental strand, 35706762 - 35706347
Alignment:
| Q |
18 |
atatatgatgagaggatgcatgttaatcgtgtgcccacacaagcatcacaatcgctgtagcagaatcttccatttgatacttacgatacatggtggggaa |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35706762 |
atatatgatgagaggatgcatgttaatcgtgtgcccacacaagcatcacaatcgctgtagcagaatcttccatttgatacttacgatacatggtggggaa |
35706663 |
T |
|
| Q |
118 |
aatctttcaaatatgtgggtctatatctagaaaacagggacaccaagtcatgaaaattggcttaccatttctgaccttcagattcaatcttttgttgtca |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35706662 |
aatctttcaaatatgtgggtctatatctagaaaacagggacaccaagtcatgaaaattggcttaccatttctgaccttcagattcaatcttttgttgtca |
35706563 |
T |
|
| Q |
218 |
aatgaaaagcactagtcatccgccaaaggaccacaagtccaatttcatgcatccatttgcgatttcaaaagccaaaaccaataagaacccttcatttaga |
317 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35706562 |
aatgaaaagcactagtcatccgccaaaggaccacaagtccaatttcatgcatccatttgcgatttcaaaagccaaaaccaataagaacccttcatttaga |
35706463 |
T |
|
| Q |
318 |
tgtgggcagtgggacaagaatatgatagcacatacgttgttcaataggcggggaaccgtgtaagaaagaaaataatatggatttgatcgagtggagcgaa |
417 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| || |
|
|
| T |
35706462 |
tgtgggcagtgggacaagaatatgatagcacatacgttgttcaataggcggggaaccgtgtaaggaagaaaataatatggatttgatcgagtggagcaaa |
35706363 |
T |
|
| Q |
418 |
gttttatttgccagaa |
433 |
Q |
| |
|
|||||||||||||||| |
|
|
| T |
35706362 |
gttttatttgccagaa |
35706347 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University