View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8631_low_11 (Length: 438)

Name: NF8631_low_11
Description: NF8631
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8631_low_11
NF8631_low_11
[»] chr4 (5 HSPs)
chr4 (243-312)||(13072495-13072564)
chr4 (348-420)||(13071938-13072010)
chr4 (157-221)||(13072774-13072838)
chr4 (67-138)||(13067337-13067408)
chr4 (37-83)||(13056270-13056315)


Alignment Details
Target: chr4 (Bit Score: 70; Significance: 2e-31; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 243 - 312
Target Start/End: Complemental strand, 13072564 - 13072495
Alignment:
Q  243 ttgaaggatcttgggtcaaagttttagttcaaaagaaagattcaataggctgtacaacatagttcctgaa 312  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13072564 ttgaaggatcttgggtcaaagttttagttcaaaagaaagattcaataggctgtacaacatagttcctgaa 13072495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 348 - 420
Target Start/End: Complemental strand, 13072010 - 13071938
Alignment:
Q  348 gatgaaatgttgtctaaaaatttgtttataaatggaggaaatcctcaccttataagtaatgttattgactaat 420  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||    
T  13072010 gatgaaatgttgtctaaaaatttgtttataaatggaggaaatcctcaccttataagcaatgttattgattaat 13071938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 157 - 221
Target Start/End: Complemental strand, 13072838 - 13072774
Alignment:
Q  157 aacttcacacttaccatgccacaacatatctcacattggaggagaagtggtgatggaggtagaga 221  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13072838 aacttcacacttaccatgccacaacatatctcacattggaggagaagtggtgatggaggtagaga 13072774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 67 - 138
Target Start/End: Complemental strand, 13067408 - 13067337
Alignment:
Q  67 cattttaagttagaaaaaacacattgacaaaaattgtagcaaactatgtatgtgtgtcagtaattaattgat 138  Q
    ||||||||||| |||| |||| ||||||| ||||||||||||||||| || |||||||  |||| |||||||    
T  13067408 cattttaagttcgaaataacatattgacacaaattgtagcaaactatataagtgtgtccataatcaattgat 13067337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 37 - 83
Target Start/End: Complemental strand, 13056315 - 13056270
Alignment:
Q  37 tgagagtggtcctcaattgttacctgcaaacattttaagttagaaaa 83  Q
    |||| |||||||||||||||||||||  |||||||||||||||||||    
T  13056315 tgagggtggtcctcaattgttacctg-taacattttaagttagaaaa 13056270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University