View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8631_low_14 (Length: 414)
Name: NF8631_low_14
Description: NF8631
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8631_low_14 |
 | |
|
| [»] scaffold0083 (1 HSPs) |
| | |
|
Alignment Details
Target: chr2 (Bit Score: 374; Significance: 0; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 374; E-Value: 0
Query Start/End: Original strand, 18 - 399
Target Start/End: Complemental strand, 11479845 - 11479464
Alignment:
| Q |
18 |
gtaacttcaaagtagtattcaaaagttaacacttattgtgataatttaatgtcacctgtccatatagagttgatccaattgcacctgaatgctgatggcc |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11479845 |
gtaacttcaaagtagtattcaaaagttaacacttattgtgataatttaatgtcacctgtccatatagagttgatccaattgcacctgaatgctgatggcc |
11479746 |
T |
|
| Q |
118 |
aactccatatatgacataaccgccgttttgcattgggaagcttgctctcttgacatcaacacaactactgcgattcacaaaacttgtgttgcaaggttca |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11479745 |
aactccatatatgacataaccgccgttttgcattgggaagcttgctctcttgacatcaacacaactactgcgattcacaaaacttgtgttgcaaggttca |
11479646 |
T |
|
| Q |
218 |
acttcatactcaagctgtatatgtaacaaagaatatatgttaatcacacgaactagtattatatatatttttctaataaaattgagattcaaatatgaat |
317 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11479645 |
acttcatactcaagctgtatatgtaacaaagaatatatgttaatcacacgaactagtattatatatatttttctaataaaattgagattcaaatatgaat |
11479546 |
T |
|
| Q |
318 |
ttaattactatgcataattaagagtgtaaaaacattttatgtacacatgtaatctaatcataacatgtatcaacctgactct |
399 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
11479545 |
ttaattactatgcataattaacagtgtaaaaacattttatgtacacatctaatctaatcataacatgtatcaacctgactct |
11479464 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 146; E-Value: 9e-77
Query Start/End: Original strand, 69 - 332
Target Start/End: Complemental strand, 11473617 - 11473350
Alignment:
| Q |
69 |
tcacctgtccatatagagttgatccaattgcacctgaatgctgatggccaactccatatatgacataaccgccgttttgcattgggaagcttgctctctt |
168 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||| ||||| ||||||||||| |||| |||||| || ||||||||||||||||||| |||||| |
|
|
| T |
11473617 |
tcacctttccatatagagttgatccaattgcacctgaatgttgatgaccaactccatagatgagataaccaccattttgcattgggaagcttgttctctt |
11473518 |
T |
|
| Q |
169 |
gacatcaacacaactactgcgattcacaaaacttgtgttgcaaggttcaacttcatactcaagctgtatatgtaacaaagaatatatgttaatcacac-- |
266 |
Q |
| |
|
|||||| ||||||||||| ||||| |||||||||||||||||| |||||||||||| |||| |||||||||||||||||||| ||||||| |||||| |
|
|
| T |
11473517 |
gacatcgacacaactacttggattctcaaaacttgtgttgcaagtttcaacttcatattcaatctgtatatgtaacaaagaatttatgttactcacacat |
11473418 |
T |
|
| Q |
267 |
gaactagtattatata--tatttttctaataaaattgagattcaaatatgaatttaattactatgcat |
332 |
Q |
| |
|
|||||||||||||||| | ||||||| | ||||||||||||||||| || |||||| | ||||||| |
|
|
| T |
11473417 |
gaactagtattatatatttttttttcttgttaaattgagattcaaataggattttaataattatgcat |
11473350 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 110; E-Value: 3e-55
Query Start/End: Original strand, 28 - 236
Target Start/End: Complemental strand, 11485930 - 11485721
Alignment:
| Q |
28 |
agtagtattcaaaagttaacacttattgtgataatttaatgt-cacctgtccatatagagttgatccaattgcacctgaatgctgatggccaactccata |
126 |
Q |
| |
|
||||| ||||||| |||||| | |||| || ||||||||| ||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
11485930 |
agtagcattcaaatattaacaatgattgcaattatttaatgttcacctttccatatagagttgatccaattgcacctgaatgctgatgaccaactccata |
11485831 |
T |
|
| Q |
127 |
tatgacataaccgccgttttgcattgggaagcttgctctcttgacatcaacacaactactgcgattcacaaaacttgtgttgcaaggttcaacttcatac |
226 |
Q |
| |
|
||||||||||| || ||||||||||||||||||||||| |||||||||||||||| ||| ||||| | | |||||||| |||||||||| |||||||| |
|
|
| T |
11485830 |
gatgacataaccaccattttgcattgggaagcttgctcttttgacatcaacacaaccactacgatttaaataacttgtgctgcaaggttctacttcatat |
11485731 |
T |
|
| Q |
227 |
tcaagctgta |
236 |
Q |
| |
|
|||| ||||| |
|
|
| T |
11485730 |
tcaaactgta |
11485721 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 91; Significance: 6e-44; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 91; E-Value: 6e-44
Query Start/End: Original strand, 61 - 239
Target Start/End: Complemental strand, 21547415 - 21547237
Alignment:
| Q |
61 |
atttaatgtcacctgtccatatagagttgatccaattgcacctgaatgctgatggccaactccatatatgacataaccgccgttttgcattgggaagctt |
160 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| || |||| ||||||||||| |||||||||||||| ||| ||| ||||||||| |
|
|
| T |
21547415 |
atttaatgtcacctgtccatatagagttgatccaattgcacctgtgtgtagatgaccaactccatagatgacataaccgccacttttcatcgggaagctt |
21547316 |
T |
|
| Q |
161 |
gctctcttgacatcaacacaactactgcgattcacaaaacttgtgttgcaaggttcaacttcatactcaagctgtatat |
239 |
Q |
| |
|
|||||||| ||||||||||||| || | ||||||| |||| || ||||||||||||||||||| || | |||||||| |
|
|
| T |
21547315 |
gctctcttcacatcaacacaacctctaccattcacattacttttgctgcaaggttcaacttcatattctacctgtatat |
21547237 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0083 (Bit Score: 77; Significance: 1e-35; HSPs: 1)
Name: scaffold0083
Description:
Target: scaffold0083; HSP #1
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 61 - 225
Target Start/End: Complemental strand, 48462 - 48298
Alignment:
| Q |
61 |
atttaatgtcacctgtccatatagagttgatccaattgcacctgaatgctgatggccaactccatatatgacataaccgccgttttgcattgggaagctt |
160 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||| |||| ||| ||||||||||| ||||||||||| | ||||||||||| || ||| |
|
|
| T |
48462 |
atttaatgtcacctgtccatatagagttgatccaattgaacctgcatgcaaatgaccaactccatagatgacataaccttcattttgcattggaaaactt |
48363 |
T |
|
| Q |
161 |
gctctcttgacatcaacacaactactgcgattcacaaaacttgtgttgcaaggttcaacttcata |
225 |
Q |
| |
|
|| ||||| ||||||||||||| ||| | ||||| |||| || ||||||||||||||||||| |
|
|
| T |
48362 |
gcactcttcacatcaacacaaccactatcactcacattacttttgctgcaaggttcaacttcata |
48298 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 36; Significance: 0.00000000004; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 71 - 114
Target Start/End: Original strand, 38214003 - 38214046
Alignment:
| Q |
71 |
acctgtccatatagagttgatccaattgcacctgaatgctgatg |
114 |
Q |
| |
|
||||||||||||||||||||||||||| | |||||||||||||| |
|
|
| T |
38214003 |
acctgtccatatagagttgatccaattccgcctgaatgctgatg |
38214046 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 71 - 182
Target Start/End: Original strand, 38226382 - 38226493
Alignment:
| Q |
71 |
acctgtccatatagagttgatccaattgcacctgaatgctgatggccaactccatatatgacataaccgccgttttgcattgggaagcttgctctcttga |
170 |
Q |
| |
|
||||| || |||||||||||||||||| |||||||||||||||| |||| ||||| || ||||| || || |||| | ||||| |||| ||||| | |
|
|
| T |
38226382 |
acctgcccgtatagagttgatccaattccacctgaatgctgatgagcaacaccatagatcacatagccaccagtttgtagtgggagacttgtcctcttca |
38226481 |
T |
|
| Q |
171 |
catcaacacaac |
182 |
Q |
| |
|
|||||||||||| |
|
|
| T |
38226482 |
catcaacacaac |
38226493 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 71 - 135
Target Start/End: Original strand, 38242896 - 38242960
Alignment:
| Q |
71 |
acctgtccatatagagttgatccaattgcacctgaatgctgatggccaactccatatatgacata |
135 |
Q |
| |
|
|||||||||||||| || ||||||||| |||||||||||||||| |||| ||||| || ||||| |
|
|
| T |
38242896 |
acctgtccatatagggtggatccaattccacctgaatgctgatgtgcaacaccatagatcacata |
38242960 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 71 - 135
Target Start/End: Original strand, 38253249 - 38253313
Alignment:
| Q |
71 |
acctgtccatatagagttgatccaattgcacctgaatgctgatggccaactccatatatgacata |
135 |
Q |
| |
|
||||||||| |||| |||||||||||| |||||||||||||||| |||| ||||| || ||||| |
|
|
| T |
38253249 |
acctgtccaaatagggttgatccaattccacctgaatgctgatgagcaacaccatagatcacata |
38253313 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 71 - 114
Target Start/End: Original strand, 38237921 - 38237964
Alignment:
| Q |
71 |
acctgtccatatagagttgatccaattgcacctgaatgctgatg |
114 |
Q |
| |
|
||||||||||||||||||||||||||| | |||||||| ||||| |
|
|
| T |
38237921 |
acctgtccatatagagttgatccaattccgcctgaatgttgatg |
38237964 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University