View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8631_low_16 (Length: 392)
Name: NF8631_low_16
Description: NF8631
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8631_low_16 |
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Alignment Details
Target: chr6 (Bit Score: 267; Significance: 1e-149; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 267; E-Value: 1e-149
Query Start/End: Original strand, 18 - 389
Target Start/End: Original strand, 26304849 - 26305216
Alignment:
| Q |
18 |
acaaattgcatcatccacattgtgcattgtagaaaacaacttatgtgggaatacacacacatgcataatggtatataagaaagcagcttcaacatatgat |
117 |
Q |
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| T |
26304849 |
acaaattgcatcatccacattgtgtattgtagaaaacaacttatgtgggaatacacacacatgcataatggtatataagaaagcagcttcaacatatgat |
26304948 |
T |
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| Q |
118 |
aataacaaacaagtttcttctcttaaaatttgttggaaatcattattacatatacacttggccacatgcannnnnnnnnnnnnnnngaaacaactatata |
217 |
Q |
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| T |
26304949 |
aataacaaacaagtttcttcccttaaaatttgttggaaatcattattacatatacaattggccacatgcatttttgttttgtttttgaaactac----ta |
26305044 |
T |
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| Q |
218 |
aatttattgaaagcatacccaacacaagatgtgaataggcagcacaaagattacagtccttggtcacatgcatgtggaatgtatatatatagtttataaa |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26305045 |
aatttattgaaagcatacccaacacaagatgtgaataggcagcacaaagattacagtccttggtcacatgcatgtggaatgtatatatatagtttataaa |
26305144 |
T |
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| Q |
318 |
tttattgaagatctcaagtttgtgaggtaaggatattggatctatgcattaaggtgtcctctctgcttctcc |
389 |
Q |
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|||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||| | |||||| |
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| T |
26305145 |
tttattgagtatctcaagtttgtgaggtaaggatattggatctatgcatggaggtgtcctctcagtttctcc |
26305216 |
T |
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