View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8631_low_17 (Length: 387)
Name: NF8631_low_17
Description: NF8631
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8631_low_17 |
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Alignment Details
Target: chr3 (Bit Score: 323; Significance: 0; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 323; E-Value: 0
Query Start/End: Original strand, 38 - 372
Target Start/End: Complemental strand, 4141689 - 4141355
Alignment:
| Q |
38 |
tgattctaattatgattttgatgtttttcaaatgcactgtaatatttattttttgcaatgtatgctcaaggatgcacaaattttatataatgtttgctac |
137 |
Q |
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| T |
4141689 |
tgattctaattatgattttgatgtttttcaaatgcactgtaatatttattttttgcaatgtatgctcaaggatgcacaaatcttatataatgtttgctac |
4141590 |
T |
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| Q |
138 |
aaatcttgcatgtacagtatgaattgagataccgcgatggtcgcaatgggtatataaagaacgacaaagttataggagtgtagagcaaaatgaattactt |
237 |
Q |
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| T |
4141589 |
aaatcttgcatgtacagtatgaattgagataccgcgatggtcacaatgggtatataaagaacgacaaagttataggagtgtagagcaaaatgaattactt |
4141490 |
T |
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| Q |
238 |
atattgaactggttttctaccaacaaaggtagtatagtgtctctagagttaactagtgcagatgaataacaagctcattgcatttcaaagaaatactaca |
337 |
Q |
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| T |
4141489 |
atattgaactggttttctatcaacaaaggtagtatagtgtctctagagttaactagtgcagatgaataacaagctcattgcatttcaaagaaatactaca |
4141390 |
T |
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| Q |
338 |
ttttgaataacaatctcattcgcaacgatattctt |
372 |
Q |
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| T |
4141389 |
ttttgaataacaatctcattcgcaacgatattctt |
4141355 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 88 - 124
Target Start/End: Original strand, 3755079 - 3755115
Alignment:
| Q |
88 |
ttttgcaatgtatgctcaaggatgcacaaattttata |
124 |
Q |
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| T |
3755079 |
ttttgcaatgtatgctcaaggatgcagaaattttata |
3755115 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 95 - 147
Target Start/End: Complemental strand, 2677807 - 2677757
Alignment:
| Q |
95 |
atgtatgctcaaggatgcacaaattttatataatgtttgctacaaatcttgca |
147 |
Q |
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| T |
2677807 |
atgtatgcttaaggatgcacaaattt--tataatgtttacttcaaatcttgca |
2677757 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 220 - 256
Target Start/End: Original strand, 3755121 - 3755157
Alignment:
| Q |
220 |
gagcaaaatgaattacttatattgaactggttttcta |
256 |
Q |
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| T |
3755121 |
gagccaaatgaattacttatactgaactggttttcta |
3755157 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 61 - 123
Target Start/End: Original strand, 11082350 - 11082412
Alignment:
| Q |
61 |
tttttcaaatgcactgtaatatttattttttgcaatgtatgctcaaggatgcacaaattttat |
123 |
Q |
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| T |
11082350 |
tttttcaaaggcattgtaattttcattttttgcattgtatgctcaaggttacacaaatattat |
11082412 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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