View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8631_low_2 (Length: 578)
Name: NF8631_low_2
Description: NF8631
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8631_low_2 |
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Alignment Details
Target: chr5 (Bit Score: 480; Significance: 0; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 480; E-Value: 0
Query Start/End: Original strand, 18 - 563
Target Start/End: Original strand, 6120198 - 6120747
Alignment:
| Q |
18 |
atgcctatgtttatgttgatatgtagctgttgttattgcgtgcatgtaggtaggaagaaaaaatggcccatcaagggaggcctggtacttctgcatcacc |
117 |
Q |
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| T |
6120198 |
atgcctatgtttatgttgatatgtagctgttgttattgcgtgcatgtaggtaggaagaaaaaatggcccatcaagggaggcctggtacttctgcatcacc |
6120297 |
T |
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| Q |
118 |
accaacaaaccctcctcgtcgggtgcggacaatgcagacaatatcagcgaatccagttcgtgatctttgggcagcaaggaataggctcacggaagaggta |
217 |
Q |
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| T |
6120298 |
accaacaaaccctcctcgtcgggtgcggacaatgcagacaatatcagcgaatccagttcgtgatctttgggcagcaaggaataggctcacggaagaggta |
6120397 |
T |
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| Q |
218 |
tatatactttcttaattgatatgtttattaatttagcattcatgagtaaaatctggtatttgggtatataatgtagcaaatttttagctccctaaaaaac |
317 |
Q |
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| T |
6120398 |
tatatactttcttaattgatatgtttattaatttagcattcatgagtaaaatctggtatttgggtatataatgtagcaaatttttagctccctacaacac |
6120497 |
T |
|
| Q |
318 |
atttatcttatattgatttaaagtctttagcggttgacaattaggaacgacatattctttactaaagaaaattcacattacttcattttagttgttggca |
417 |
Q |
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| T |
6120498 |
atttatcttatattgatttaaagtctttagtggttggcaattaggaacaacatattctttactaaagaaaattcacattacttcattttagttgttggca |
6120597 |
T |
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| Q |
418 |
agggacttgcaaaatgaatctcaagaaagcactgataattcagagagtagtgacgaggtaaatgctatg----taattaattaattattaatgtacaagt |
513 |
Q |
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| T |
6120598 |
agggacttgcaaaatgaatctcaagaaagcactgataattcagagagtagtgacgaggtaaatgttatgtaattaattaattaattattaatgtacaaat |
6120697 |
T |
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| Q |
514 |
aatacatgtcttcnnnnnnncatgtatgttgcaaatatatgtcacacagg |
563 |
Q |
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| T |
6120698 |
aatacatgtcttctttttttcatgtattttgcaaatatatgtcacacagg |
6120747 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 71; E-Value: 7e-32
Query Start/End: Original strand, 286 - 406
Target Start/End: Original strand, 6132322 - 6132439
Alignment:
| Q |
286 |
taatgtagcaaatttttagctccctaaaaaacatttatcttatattgatttaaagtctttagcggttgacaattaggaacgacatattctttactaaaga |
385 |
Q |
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| T |
6132322 |
taatgtagcaaatttttagctctctacaacacatttctcttatattgatttaaagtcttttgtggttggca---aggaacgacatattctttgctaaaga |
6132418 |
T |
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| Q |
386 |
aaattcacattacttcatttt |
406 |
Q |
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| T |
6132419 |
aaattcaaattacttcatttt |
6132439 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 22 - 91
Target Start/End: Original strand, 32621178 - 32621247
Alignment:
| Q |
22 |
ctatgtttatgttgatatgtagctgttgttattgcgtgcatgtaggtaggaagaaaaaatggcccatcaa |
91 |
Q |
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| T |
32621178 |
ctatgtttatgttaatatatagttgttgttattgcgtgcatacatgtaggaagaaatgatggctcatcaa |
32621247 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 34; Significance: 0.0000000008; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 22 - 83
Target Start/End: Original strand, 30193430 - 30193491
Alignment:
| Q |
22 |
ctatgtttatgttgatatgtagctgttgttattgcgtgcatgtaggtaggaagaaaaaatgg |
83 |
Q |
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| T |
30193430 |
ctatgtttatgttgatatacagttgttgttatggcgtgcatgcaggtaagaagcaaaaatgg |
30193491 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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