View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8631_low_20 (Length: 307)
Name: NF8631_low_20
Description: NF8631
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8631_low_20 |
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Alignment Details
Target: chr5 (Bit Score: 288; Significance: 1e-161; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 288; E-Value: 1e-161
Query Start/End: Original strand, 1 - 292
Target Start/End: Complemental strand, 21908009 - 21907718
Alignment:
| Q |
1 |
acatatccaaatgtccaaaagcaataataaaatgatacaaaacgatataactagtcaaaagagtatacctgatgactattgagtctgtgagcatcagatc |
100 |
Q |
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| T |
21908009 |
acatatccaaatgtccaaaagcaataataaaatgatacaaaacgatataactagtcaaaagagtatacctgatgactattgagtctgtgagcatcagatc |
21907910 |
T |
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| Q |
101 |
cagcttcataaagatcattctcgacatcatccagcggatcactaacaatctcaacacagagttgtcaggtcaatcttttgatggtataaaaatattgaaa |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21907909 |
cagcttcataaagatcattctcgacatcatccagcggatcactaacaatctcaacatagagttgtcaggtcaatcttttgatggtataaaaatattgaaa |
21907810 |
T |
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| Q |
201 |
tcgtcacgaagtgcatgagccaaagaacaaagtgcatcaacaacatcctctcagaacttattgttttcctgtaaaaaataagtacaattgat |
292 |
Q |
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| T |
21907809 |
tcgtcacgaagtgcatgagccaaagaacaaagtgcatcaacaacatcctctcagaacttattgttttcctgtaaaaaataagtacaattgat |
21907718 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 178 - 249
Target Start/End: Original strand, 409869 - 409940
Alignment:
| Q |
178 |
ttgatggtataaaaatattgaaatcgtcacgaagtgcatgagccaaagaacaaagtgcatcaacaacatcct |
249 |
Q |
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| T |
409869 |
ttgatggtataaaaatcttgaaatcctcgccaagggcatgagccaaacaacaaagtgcatcaacagcatcct |
409940 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 59 - 156
Target Start/End: Original strand, 409555 - 409652
Alignment:
| Q |
59 |
aagagtatacctgatgactattgagtctgtgagcatcagatccagcttcataaagatcattctcgacatcatccagcggatcactaacaatctcaaca |
156 |
Q |
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| T |
409555 |
aagagcatacctgatggcctttgagtttgtgagcatcatatccagcttcataaggatctttctccacatcatgtagtggatcactaataacctcaaca |
409652 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 108; Significance: 3e-54; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 60 - 247
Target Start/End: Complemental strand, 26557359 - 26557173
Alignment:
| Q |
60 |
agagtatacctgatgactattgagtctgtgagcatcagatccagcttcataaagatcattctcgacatcatccagcggatcactaacaatctcaacacag |
159 |
Q |
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||||||||||||||| | ||||| | ||||||||||||||||| |||||||||||||||||| |||||| | |||||||||||||||| |||||||| |
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| T |
26557359 |
agagtatacctgatggccattgaat-tgtgagcatcagatccaacttcataaagatcattctgaacatcaactagcggatcactaacaacctcaacacga |
26557261 |
T |
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| Q |
160 |
agttgtcaggtcaatcttttgatggtataaaaatattgaaatcgtcacgaagtgcatgagccaaagaacaaagtgcatcaacaacatc |
247 |
Q |
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||||| ||||||| |||||||||| |||||||||||||||||| ||| |||||||||||||||||||||||||||||||||| |||| |
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| T |
26557260 |
agttgacaggtcagtcttttgatgatataaaaatattgaaatcatcatcaagtgcatgagccaaagaacaaagtgcatcaacatcatc |
26557173 |
T |
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