View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8631_low_21 (Length: 301)
Name: NF8631_low_21
Description: NF8631
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8631_low_21 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 245; Significance: 1e-136; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 245; E-Value: 1e-136
Query Start/End: Original strand, 53 - 301
Target Start/End: Complemental strand, 52914802 - 52914554
Alignment:
| Q |
53 |
gtagttgaaaattaaagtagttggacccaaacaccctgacttggaacttcttgatggaccacaaatagtaaataatatcccggaggtgcaagaatgggtg |
152 |
Q |
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| T |
52914802 |
gtagttgaaaattagagtagttggacccaaacaccctgacttggaacttcttgatggaccacaaatagtaaataatatcccggaggtgcaagaatgggtg |
52914703 |
T |
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| Q |
153 |
aatttggtattgccacttcaacttggtatgttgatgtcgattctccaacaacatttttactactactcaattcatcaagcaccaacaacctttgattcat |
252 |
Q |
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| T |
52914702 |
aatttggtattgccacttcaacttggtatgttgatgtcgattctccaacaacatttttactactactcaattcatcaagcaccaacaacctttgattcat |
52914603 |
T |
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| Q |
253 |
tgagaaagaatgcgtgttaaaagacggtgcatacattgtcactgacacc |
301 |
Q |
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| T |
52914602 |
tgagaaagaatgcgtgttaaaagacggtgcatacattgtcactgacacc |
52914554 |
T |
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Target: chr1 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 57 - 154
Target Start/End: Complemental strand, 7571646 - 7571549
Alignment:
| Q |
57 |
ttgaaaattaaagtagttggacccaaacaccctgacttggaacttcttgatggaccacaaatagtaaataatatcccggaggtgcaagaatgggtgaa |
154 |
Q |
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| T |
7571646 |
ttgaaaattaaagtatttgtatccaaattccttcactaggaatttctttatgaaccacaaatagtagataaaatccaggaggcgcaagaataggtgaa |
7571549 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 232 - 275
Target Start/End: Complemental strand, 531654 - 531611
Alignment:
| Q |
232 |
caccaacaacctttgattcattgagaaagaatgcgtgttaaaag |
275 |
Q |
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| T |
531654 |
caccaacaacctttgattcattgagaatgaatgtgtattaaaag |
531611 |
T |
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