View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8631_low_27 (Length: 273)
Name: NF8631_low_27
Description: NF8631
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8631_low_27 |
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Alignment Details
Target: chr4 (Bit Score: 241; Significance: 1e-133; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 1 - 253
Target Start/End: Complemental strand, 1373389 - 1373137
Alignment:
| Q |
1 |
cggaacaagtgaaggtttgatggcagacaacgatggatcccaacagcaagactatgtgtaagcagactggtttatttttgaacaagggaagaataactga |
100 |
Q |
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| T |
1373389 |
cggaacaagtgaaggtttgatggcagacaacgatggatcccaacagcaagactatgtgtaagcagactggtttatttttgaacaagggaagaataactga |
1373290 |
T |
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| Q |
101 |
atgagtattctaatctatatattatagttgacttgatagcttgaaaataaagtcttatttggaaagatttcaacctatactgaaattgctctttatatta |
200 |
Q |
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| T |
1373289 |
atgagtattctaatctatatattatagttgacttgatagcttgaaaataaagtcttatttggaaagatttcaacctatactgaaattgatctttatatta |
1373190 |
T |
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| Q |
201 |
tttgataaatggtatttctttcaactcatatcagttgtaggcattgtaacatc |
253 |
Q |
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| T |
1373189 |
tttgataaatggtctttctttcaactcatatcagttgtaggcaatgtaacatc |
1373137 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 6 - 244
Target Start/End: Complemental strand, 1385199 - 1384959
Alignment:
| Q |
6 |
caagtgaaggtttgatggcagacaacgatggatcccaacagcaagactatgtgtaagcagactggtttatttttgaacaag--ggaagaataactgaatg |
103 |
Q |
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| T |
1385199 |
caagtgaaggtttgacggcagacaataatggatcccaacagcaagatactgtgtaagttgactccctcaattttgaacaagagggtagaaaaactgaatt |
1385100 |
T |
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| Q |
104 |
agtattctaatctatatattatagttgacttgatagcttgaaaataaagtcttatttggaaagatttcaacctatactgaaattgctctttatattattt |
203 |
Q |
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| T |
1385099 |
agtactctaatctgtatattatggttgacttgatggcttgaagataaagccttatttggaaagatttcaacctatactgaaactgtcttttatgtaattt |
1385000 |
T |
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| Q |
204 |
gataaatggtatttctttcaactcatatcagttgtaggcat |
244 |
Q |
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| T |
1384999 |
gataaatggtcttcctttcaacttatgttagttgtaggcat |
1384959 |
T |
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