View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8631_low_28 (Length: 267)
Name: NF8631_low_28
Description: NF8631
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8631_low_28 |
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Alignment Details
Target: chr8 (Bit Score: 221; Significance: 1e-121; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 221; E-Value: 1e-121
Query Start/End: Original strand, 20 - 255
Target Start/End: Complemental strand, 32530302 - 32530066
Alignment:
| Q |
20 |
gctaatggatacctgggctggaattactagatcataatctgtcttggtcctgatatatttaagcttatattagttgcgtcagttagcttaatcactattt |
119 |
Q |
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| T |
32530302 |
gctaatggatacctgggctggaattactagatcataatctgtcttggtcctgatatatctaagcttatattagttgcgtcagttagcttaatcactattt |
32530203 |
T |
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| Q |
120 |
tcatgcgtaaagtttcattatacaaaggtcaattgtcaatgaactccaaattgt-gggttatgccaaactgttagaaggtcttagatataaatagtttgt |
218 |
Q |
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| T |
32530202 |
tcatgcgtaaagtttcattatacaaaggtcaattgtcaatgaactccaaattgtggggttatgccaaactgttagaaggtcttagatataaatagtttgt |
32530103 |
T |
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| Q |
219 |
cattagacatgatttatgataggatattcttctcact |
255 |
Q |
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| T |
32530102 |
cattagacatgatttatgataggatattcttgtcact |
32530066 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 200 - 255
Target Start/End: Complemental strand, 32544620 - 32544565
Alignment:
| Q |
200 |
ttagatataaatagtttgtcattagacatgatttatgataggatattcttctcact |
255 |
Q |
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| T |
32544620 |
ttagatttaaatagtttgtcattatacatgatttatgataggatattcttgtcact |
32544565 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 45 - 111
Target Start/End: Complemental strand, 32544845 - 32544779
Alignment:
| Q |
45 |
actagatcataatctgtcttggtcctgatatatttaagcttatattagttgcgtcagttagcttaat |
111 |
Q |
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| T |
32544845 |
actagatcataagctgtcttggtcgtgatatatttaagcagatattagctgcattagttagcttaat |
32544779 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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