View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8631_low_3 (Length: 571)
Name: NF8631_low_3
Description: NF8631
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8631_low_3 |
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Alignment Details
Target: chr2 (Bit Score: 423; Significance: 0; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 423; E-Value: 0
Query Start/End: Original strand, 1 - 459
Target Start/End: Original strand, 44150429 - 44150886
Alignment:
| Q |
1 |
ttattttactaaggagaatgagaaaatatagatcgacctttcacatgcattgacaaaacaatttagttaatgatattctattattattctatatatgaat |
100 |
Q |
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| T |
44150429 |
ttattttactaaggagaaagagaaaatatagatcgacctttcacatgcattgacaaaacaatttagttaatgatattctattattattctatatatgaat |
44150528 |
T |
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| Q |
101 |
acaaaataaattttgaaacgtgtgtggaaaacaagttgtgccctttcacaacaagaattaatgaagagtttttctttcacaacacggggccagagctagc |
200 |
Q |
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| T |
44150529 |
acaaaataaattttgaaacgtgtgtggaaaacaagttgtgccctttaacaacaagaattaatgaagagtttttctttcacaacacggggccatagctagc |
44150628 |
T |
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| Q |
201 |
tagctagacttttaacaaaggaagtaactgcaagatgtcttttatagctttttggcaagacaaggtaccattgatcttgttctctctccacaccatgtct |
300 |
Q |
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| T |
44150629 |
tagctagacttttaacgatggaagtaactgcaagatgtcttttatagctttttggcaagacaaggtaccattgatcatgttctctctcca-accatgtct |
44150727 |
T |
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| Q |
301 |
atggaaactttggctaaccataaacccttgttgtttgtcaaggatatgtcaatgtgaatccgtgagactgagagccaaatttcagtattatgatacttta |
400 |
Q |
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| T |
44150728 |
atggaaactttggctaaccataaacccttgttgtttgtcaaggatatgtcaatatgaatccgtgagactgagagccaaatttcagtattatgatacttta |
44150827 |
T |
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| Q |
401 |
aaatgccatataataagaaagggtccactatgccatcaattgcctctccttagggaaga |
459 |
Q |
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| T |
44150828 |
aaatgccatataataagaaagggtccactatgccatcaattgcctctccttagggaaga |
44150886 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 514 - 552
Target Start/End: Original strand, 44150911 - 44150949
Alignment:
| Q |
514 |
tattgtaggggcaatccctttctccatttgctttgaatt |
552 |
Q |
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| T |
44150911 |
tattgtaggggcaatccctttctccatttgctttgaatt |
44150949 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 470 - 499
Target Start/End: Original strand, 44150885 - 44150914
Alignment:
| Q |
470 |
gagacttttgagttatgcttgccccttatt |
499 |
Q |
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| T |
44150885 |
gagacttttgagttatgcttgccccttatt |
44150914 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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