View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8631_low_30 (Length: 254)
Name: NF8631_low_30
Description: NF8631
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8631_low_30 |
 | |
|
| [»] chr2 (1 HSPs) |
| |
|
Alignment Details
Target: chr2 (Bit Score: 213; Significance: 1e-117; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 38 - 254
Target Start/End: Complemental strand, 3458474 - 3458258
Alignment:
| Q |
38 |
aaatttaacaagttagtttgcattttactgtgtgtggatagctgatatactgaaattctgtattgatcagcggtcatatatccgtctttgttacaacttg |
137 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3458474 |
aaatttaacaagttagtttgcattttactgtgtgtggatagctgatatactgaaattctgtattgatcagcggtcatatatccgtctttgttacaacttg |
3458375 |
T |
|
| Q |
138 |
aaaaaggtgtcactgatgctgaggataaaaaacagaaggttgtatgcatggagcgatatcgtagaagagaagatgaggagcacaaacaattctcagacat |
237 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3458374 |
aaaaaggtgtcactgatgctgaggataaaaaacagaaggttgtatgcatggagcggtatcgtagaagagaagatgaggagcacaaacaattctcagacat |
3458275 |
T |
|
| Q |
238 |
agactttgaaagagaag |
254 |
Q |
| |
|
||||||||||||||||| |
|
|
| T |
3458274 |
agactttgaaagagaag |
3458258 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 51; Significance: 3e-20; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 103 - 213
Target Start/End: Complemental strand, 35542840 - 35542730
Alignment:
| Q |
103 |
atcagcggtcatatatccgtctttgttacaacttgaaaaaggtgtcactgatgctgaggataaaaaacagaaggttgtatgcatggagcgatatcgtaga |
202 |
Q |
| |
|
|||||| ||||| ||||| ||||| || |||||||| |||||||| ||||| ||||||||||||| || |||| ||||||||||||| | ||||||||| |
|
|
| T |
35542840 |
atcagctgtcatttatccttctttattgcaacttgagaaaggtgttactgactctgaggataaaaagcaaaaggctgtatgcatggagaggtatcgtaga |
35542741 |
T |
|
| Q |
203 |
agagaagatga |
213 |
Q |
| |
|
||||| ||||| |
|
|
| T |
35542740 |
agagatgatga |
35542730 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University