View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8631_low_37 (Length: 235)
Name: NF8631_low_37
Description: NF8631
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8631_low_37 |
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Alignment Details
Target: chr5 (Bit Score: 134; Significance: 7e-70; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 134; E-Value: 7e-70
Query Start/End: Original strand, 1 - 215
Target Start/End: Complemental strand, 37342469 - 37342255
Alignment:
| Q |
1 |
catcggttgaacattttccatgtttattccattccatctcccaaaaagaaaaatcactttgaccggaatttagacttggccattcattgtgaagttgatc |
100 |
Q |
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|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
37342469 |
catcggttgagcattttccatgtttattccattccatctcccaaaaagaaaaatcactttgaccggaatttagacttggccattcattgtgaagtcgatc |
37342370 |
T |
|
| Q |
101 |
ctctattgacgtaacctagtgcatnnnnnnnnnnnnnnnncagtttaatataaagtttaacaagattaaacaaaccattccttcaacaaacnnnnnnnga |
200 |
Q |
| |
|
||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
37342369 |
ctctattgacgtaacctggtgcataaaaataaaataaaaacagtttaatataaagtttaacaagattaaacaaaccattccttcaacaaacaaaaaaaga |
37342270 |
T |
|
| Q |
201 |
ttaaacataccatat |
215 |
Q |
| |
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||||||||||||||| |
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| T |
37342269 |
ttaaacataccatat |
37342255 |
T |
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