View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8631_low_4 (Length: 552)
Name: NF8631_low_4
Description: NF8631
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8631_low_4 |
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Alignment Details
Target: chr3 (Bit Score: 468; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 468; E-Value: 0
Query Start/End: Original strand, 1 - 541
Target Start/End: Original strand, 45974152 - 45974691
Alignment:
| Q |
1 |
atcacattcacgttttctctgtgtttttcagttaccagtacctccattattattagcactatagcatatcacatttcctctttatcggaaaaccatatcc |
100 |
Q |
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| T |
45974152 |
atcacattcacgttttctctgtgtttttcagttaccagtacctccattattattagcactatagcatatcacatttcctctttatcggaaaaccatatcc |
45974251 |
T |
|
| Q |
101 |
cgctttaaacatcgcaactacgcgattatacttatcaatctgtcttctaagtttcttaagagtaaaatacaattcagcttccaactatatattatgcata |
200 |
Q |
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| T |
45974252 |
cgctttaaacatcgcaactacgcgattatacttatcaatctgtcttctaagtttcttaagagtaaaatacaattcagcttccaactatatattatgcata |
45974351 |
T |
|
| Q |
201 |
ataattagttcaagtgctgttatttgattgttgcaataagagatttgcatgcgttgagnnnnnnnnnnnnnnnnnnncagcgaagaggacggtgtcggta |
300 |
Q |
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| T |
45974352 |
ataattagttgaagtgctgttatttgattgttgcaataagagatttgcatgcgttgaggaaagaagaagaagaacagcaacgaagaggacggtgtcggta |
45974451 |
T |
|
| Q |
301 |
acggccaagtttccgtttgtttcttggtttgctacgtggcagcaagaggctcgtgagtgaaaatgccacatagagcaacttactttttcccgcgtcaatt |
400 |
Q |
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| T |
45974452 |
acggccaagtttccgtttgtttcttggtttgctacgtggc-gcaagaggctcgtgagtgaaaatgccacatagagcaacttactttttcccgcgtcaatt |
45974550 |
T |
|
| Q |
401 |
tccggagcgaggattggatgaatcatccaaaaagctattagatcaagataaggacaaaatcgtcaactccatcaaatctccaatcgaaaacgacactcca |
500 |
Q |
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| T |
45974551 |
tccggagcgaggattggatgaatcatccaaaaagctattagatcaagataaggacaaaatcgtcaactccatcaaatctccaatcgaaaacgacactcca |
45974650 |
T |
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| Q |
501 |
accacaaagtcactttcctcgtctactcctccaacaccaaa |
541 |
Q |
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| T |
45974651 |
accacaaagtcactttcctcgtctactcctccaacaccaaa |
45974691 |
T |
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