View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8631_low_40 (Length: 224)
Name: NF8631_low_40
Description: NF8631
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8631_low_40 |
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Alignment Details
Target: chr4 (Bit Score: 190; Significance: 1e-103; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 22 - 215
Target Start/End: Complemental strand, 45481479 - 45481286
Alignment:
| Q |
22 |
gagcccatatgcttcatccatattaagcttttctggacttacaccattctccaactcccaatcatatgcatgagccaacgttgctgtaagaagttgaacc |
121 |
Q |
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| T |
45481479 |
gagcccatatgcttcatccatattaagcttttctggacttacaccattctccaactcccaatcatatgcatgagccaacgttgctgtaagaagttgaacc |
45481380 |
T |
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| Q |
122 |
atcctaagaccaagactcataccagcacatattctacgtccagcaccaaaaggtatcacctcaaagtcatttcccctaacatcaacaccaaact |
215 |
Q |
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| T |
45481379 |
atcctaagaccaagactcataccagcacatattctacgtccagcaccaaaaggtatcacctcaaagtcatttcccctaacatcaacatcaaact |
45481286 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 60; Significance: 9e-26; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 60; E-Value: 9e-26
Query Start/End: Original strand, 77 - 208
Target Start/End: Complemental strand, 7663926 - 7663795
Alignment:
| Q |
77 |
tcccaatcatatgcatgagccaacgttgctgtaagaagttgaaccatcctaagaccaagactcataccagcacatattctacgtccagcaccaaaaggta |
176 |
Q |
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| T |
7663926 |
tcccaatcaaatgaatgggccagtgtagctgttagaagttggaccatacgaagccctagactcatcccaggacatattctacgtccagcaccaaaaggta |
7663827 |
T |
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| Q |
177 |
tcacctcaaagtcatttcccctaacatcaaca |
208 |
Q |
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| T |
7663826 |
taacttcaaaatcatttcccttaacatcaaca |
7663795 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 104 - 208
Target Start/End: Original strand, 7619993 - 7620097
Alignment:
| Q |
104 |
gctgtaagaagttgaaccatcctaagaccaagactcataccagcacatattctacgtccagcaccaaaaggtatcacctcaaagtcatttcccctaacat |
203 |
Q |
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| T |
7619993 |
gctgttagaagttggaccatacgaagccctagactcatcccaggacatattctacgtccagcaccaaaaggtataacttcaaaatcatttcccttaacat |
7620092 |
T |
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| Q |
204 |
caaca |
208 |
Q |
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||||| |
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| T |
7620093 |
caaca |
7620097 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 104 - 208
Target Start/End: Complemental strand, 7669596 - 7669492
Alignment:
| Q |
104 |
gctgtaagaagttgaaccatcctaagaccaagactcataccagcacatattctacgtccagcaccaaaaggtatcacctcaaagtcatttcccctaacat |
203 |
Q |
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||||| ||||| || ||||| | ||| ||||||||||| ||| ||||||||||||||||||||||||||||||| || ||||| ||||||||| |||||| |
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| T |
7669596 |
gctgttagaagctgtaccatacgaagcccaagactcatcccaacacatattctacgtccagcaccaaaaggtataacttcaaaatcatttcccttaacat |
7669497 |
T |
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| Q |
204 |
caaca |
208 |
Q |
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||||| |
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| T |
7669496 |
caaca |
7669492 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 143 - 208
Target Start/End: Complemental strand, 7683099 - 7683034
Alignment:
| Q |
143 |
ccagcacatattctacgtccagcaccaaaaggtatcacctcaaagtcatttcccctaacatcaaca |
208 |
Q |
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| T |
7683099 |
ccagcacatattctacgtccagcgccaaaaggtataacctcaaaatcatttcccttcacatcaaca |
7683034 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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